PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1143761g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 387aa MW: 42645 Da PI: 6.3501

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1143761g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00011	22	39	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR +iN++ PDK_30s1143761g001 22 RSKHSATEQRRRCKINDR 39 889*************96 PP
2	HLH	25.9	1.8e-08	75	108	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++f+ Lr+l+P++ + K +Ka+ L +++eYIk Lq PDK_30s1143761g001 75 NRFQILRDLIPHS----DHKRDKASLLLEVIEYIKFLQ 108 68********9....89****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.2E-17	20	38	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.417	20	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.62E-11	22	112	No hit	No description
SMART	SM00353	2.8E-4	26	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-6	75	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-10	75	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-17	76	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
ELNVKVDGKG SGQKPGTPTT PRSKHSATEQ RRRCKINDRG FGSLSLCSLP LLNNLLFESM 60 WLIPVFSEFH TDRTNRFQIL RDLIPHSDHK RDKASLLLEV IEYIKFLQEK VQKYESYQGW 120 CPENAKLMPW SNSQAPTDGV SDSSHVFKNG PAPPGFMFPG KFVDNTIPIA PTMLSNAQNV 180 AEPDMNPGTG AVFVPLQPNF CASVGTEYGL TQPQERLISD SDNMASQSQS WQRPSGPSDC 240 NIGSDMLSEQ EELAIDEGTI NISCVYTQGI LTTLTQALES SGIDLSQASI SAHINLGKRA 300 ISRRPTATTT MSSAKWLKSH LDPHLSSIDL QISQAEVGYP FLAIKRVFKL KDHEDPSAVN 360 QVIGDSRVGS SCEESEQALK RHKVDNS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

ELNVKVDGKG SGQKPGTPTT PRSKHSATEQ RRRCKINDRG FGSLSLCSLP LLNNLLFESM  60
WLIPVFSEFH TDRTNRFQIL RDLIPHSDHK RDKASLLLEV IEYIKFLQEK VQKYESYQGW  120
CPENAKLMPW SNSQAPTDGV SDSSHVFKNG PAPPGFMFPG KFVDNTIPIA PTMLSNAQNV  180
AEPDMNPGTG AVFVPLQPNF CASVGTEYGL TQPQERLISD SDNMASQSQS WQRPSGPSDC  240
NIGSDMLSEQ EELAIDEGTI NISCVYTQGI LTTLTQALES SGIDLSQASI SAHINLGKRA  300
ISRRPTATTT MSSAKWLKSH LDPHLSSIDL QISQAEVGYP FLAIKRVFKL KDHEDPSAVN  360
QVIGDSRVGS SCEESEQALK RHKVDNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783041.1	0.0	transcription factor BIM2-like isoform X1
TrEMBL	A0A2H3XFJ3	0.0	A0A2H3XFJ3_PHODC; transcription factor BIM2-like isoform X1
STRING	XP_008783041.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-51	BES1-interacting Myc-like protein 2