PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1143431g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 284aa    MW: 31807.8 Da    PI: 8.5294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1143431g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  PDK_30s1143431g003 14 KGPWSPEEDTKLKEFIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding37.94.2e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  PDK_30s1143431g003  69 GEFSDDEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5962IPR017930Myb domain
SuperFamilySSF466893.09E-2711109IPR009057Homeodomain-like
SMARTSM007178.0E-131364IPR001005SANT/Myb domain
PfamPF002491.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-241569IPR009057Homeodomain-like
CDDcd001671.79E-91662No hitNo description
PROSITE profilePS5129421.88963117IPR017930Myb domain
SMARTSM007171.7E-1167115IPR001005SANT/Myb domain
PfamPF002497.4E-1169111IPR001005SANT/Myb domain
CDDcd001678.86E-870113No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDTKLKEFIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGM  120
APSQRKPHQQ QQQRKQQQLL FPSPSSSSQG SCYRSPVPPL PVLESFPTIS QGAFSTVPTT  180
TSSTLLKGLS YHYQMKDSGN TIMFGSEHSC SSSDGSSTQI SYGKMDHNYI GRGGGGEQMG  240
FESCLCGGGI EDYGPSRPWE EAPLEYNYEE IKQLFCNNND HFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943399.11e-163transcription factor RAX2
TrEMBLA0A2H3Z6N31e-140A0A2H3Z6N3_PHODC; myb-related protein 308
TrEMBLA0A3Q0HZK51e-141A0A3Q0HZK5_PHODC; transcription factor MYB87-like
STRINGXP_008784046.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-77myb domain protein 36