PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1143341g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 691aa    MW: 78973.8 Da    PI: 6.9916
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1143341g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.18.1e-12368424155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++k++ +++A+++d    n+ ++k+   g f+ +e Aa  ++ a++k++g
  PDK_30s1143341g001 368 SIYRGVTRHKRTRKYEAQLWDKDGlNNnQNKKGKHGAFDDEETAAHVYDLAALKYWG 424
                         57*******************66688888866666********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-6368424IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-12368434IPR016177DNA-binding domain
CDDcd000181.41E-11368434No hitNo description
Gene3DG3DSA:3.30.730.102.9E-10369433IPR001471AP2/ERF domain
SMARTSM003806.8E-13369438IPR001471AP2/ERF domain
PROSITE profilePS5103216.12369432IPR001471AP2/ERF domain
CDDcd000189.56E-11467528No hitNo description
Gene3DG3DSA:3.30.730.104.6E-8468527IPR001471AP2/ERF domain
SMARTSM003802.5E-5468532IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-8468528IPR016177DNA-binding domain
PROSITE profilePS5103211.772468526IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MRQKTSFFAL APIVAFIVAG VPSFAAIKFT IFTVIAIIDR LLQTDHCAAI RSTLEDHCGS  60
KTWNTGNQRR LPTLASSSGS FPLLGLSRPL LRLPPLTNLG GIKLHGNKNY KTENGVKKED  120
DKLIEKKVKQ RRRRSDNPVI GTDEFKKELR RDKAPDSVEV EIAEPGKKEE RAEHLMVAHN  180
EENEDEERRD KPYQNLIQHW WDIYDILYED VFFSKPSRDR FVFRTSCSKH SAQVSPNSLS  240
LSQDIMYISK RIGYSTTCKR ELAFGVARFY PYIMGMLMWV LNHGDVIKVK YKAKPIWNIG  300
QRPMPMKVLH IAGRKKENRK GHKRGQEIGR REESEEKKGK VKSRTKLIDQ EYNVKNSHVG  360
DNDRKRTSIY RGVTRHKRTR KYEAQLWDKD GLNNNQNKKG KHGAFDDEET AAHVYDLAAL  420
KYWGPKTILN FPANMYLKEY HEMQSISKEE YIAFLRHHGN EFAKDTSEYH GVEQHYKSVG  480
WEARIGGISN NKYNYLEIYA NEEEATRAYD FAAIEHSGSD VITNFPISHY LQQAPQILEV  540
QQFSQLEVSQ EVNSMPHFLS SIEPQPEGHL QVSFEDPTNL FPSLPFGDPM VEPEATTMAA  600
VLCGASDSPQ SFTDRIFEPY MVDNNTADLF DDSYLNGPFE ENFENLFMEL EHIEGNLGGE  660
GDPNGGSKHN VDGNMERSNE AAKDQGGGGT Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-54AP2 family protein