PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1141531g006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 356aa    MW: 39383.9 Da    PI: 7.6821
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1141531g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.9e-332377155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+v+gLtl+h+kSHLQk+Rl
  PDK_30s1141531g006 23 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVQGLTLYHLKSHLQKFRL 77
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-312078IPR009057Homeodomain-like
PROSITE profilePS5129411.9072080IPR017930Myb domain
SuperFamilySSF466893.05E-162278IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-242378IPR006447Myb domain, plants
PfamPF002492.1E-72575IPR001005SANT/Myb domain
PfamPF143793.0E-23117164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNSHERPMCV QGDSGLVLTT DPKPRLRWTV ELHDRFVDAV TQLGGPDKAT PKTIMRVMGV  60
QGLTLYHLKS HLQKFRLGKQ PHKEINDHSI KDASALDMQR NAASSSGIMG RTMNENVHIT  120
EALSMQMEVQ RRIQEQLEVQ KHLQMRIEAQ RKYMQTILEK ACQTLAGEGM ASVSYKGHGN  180
QGVIHVGAMK DMGSPMSFPS LQDLHLYGGD DQLDMQQHMD RPLDGFFQAN EGVCLGKKRF  240
NPYSSNGKSP LICADDLRLQ ELGSAAACMG AQEEPSKNDQ LQIASSVIGG GIDMDSITDV  300
YETKPVLSTD GTGEKKHEGS PKLERPSPRR APLPVERINP MIRGGTLPQT RNISYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-182379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-182379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-182379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-182379157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941711.10.0myb family transcription factor APL isoform X2
SwissprotQ9SAK51e-106APL_ARATH; Myb family transcription factor APL
TrEMBLA0A2H3Z6H80.0A0A2H3Z6H8_PHODC; myb family transcription factor APL-like isoform X2
STRINGXP_008809132.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-108G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]