PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1140491g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 1198aa MW: 132074 Da PI: 4.8978 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 3e-14 | 57 | 99 | 1 | 43 |
TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 rg WT+e Ede++++ v+++G++ W+tIa+ ++ gR +kqc++r PDK_30s1140491g003 57 RGQWTPEeEDEKIIEMVNKYGPKKWSTIAQALP-GRIGKQCRER 99 899**86268***********************.********98 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.7e-15 | 232 | 274 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ PDK_30s1140491g003 232 KQAWTQEEEIALIHAHQVYGNK-WAELTKFLP-GRTDNAIKNHWN 274 799*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.753 | 52 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 56 | 103 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.74E-11 | 56 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 56 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 57 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.31E-12 | 60 | 100 | No hit | No description |
SuperFamily | SSF46689 | 2.18E-20 | 219 | 282 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 222 | 281 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.677 | 227 | 281 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-14 | 231 | 279 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-13 | 232 | 275 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.03E-11 | 234 | 274 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1198 aa Download sequence Send to blast |
MASEEGKGFK QGETSASAST SASTSTSSAV QGGRGDEIQR QRSFHGRTTG PTRRSTRGQW 60 TPEEEDEKII EMVNKYGPKK WSTIAQALPG RIGKQCRERM EDKYERQMIH MFTTYEEIGT 120 KSILGPFVEV GSQPRKILSL IVGTKTCLND KGSQYSPREE EPEGCLDLAK SIKDCDLAER 180 RKSLRVYWTM SRPIGAKRDT QFISTLDLVF SQASTSDSQK RWHNHLNPAI NKQAWTQEEE 240 IALIHAHQVY GNKWAELTKF LPGRTDNAIK NHWNSSVKKK LDSYLASGLL AQFQGLPHAE 300 NPAQCISSSV VNRQSSEDSG VKDRQEVEDS SECSKGSSSA LVSCYQSDYE LAISVHDDIK 360 LVEAAKKKDI QDSQLSMCSK EYYTSMEEIE CIVPEIECEP MVSVTAPCQN LHEIEVSERL 420 ANQMVSQELP NSLLEATQRL PELKRTSEYH THCVENHQNK SALFPDSGGL KMPTCITNSG 480 LESENQDKIL MAEAACCSGN IFGFPDSGGL KMPTCITNSG LESENQGKIL MAEAACCSGN 540 IFGAEMHQDI SMADPITAPN IINMDYYLGS PQYPANSSDM LGNSYCQSLM TVVPPSYICP 600 DNGKPVYRSD DAVTRNISVG TQDSELITCM YGGARSKICV PEDQDKENET LEQTYMEMMD 660 SEPPNATDNI TSSDENPAVQ TEEHQDAGAL FYEPPRFPSL EIPFVSCDLI SSGDLQQAYS 720 PLGIRQLMMS STPCSLWDSP SHDDSPDALL KNAARSFICT PSIMKKRQRE LLSPLQERRI 780 DKKSGIDTDH VLLSTPSISR TNNSLIDTMN DEGVAPRISS CSSEVDALYP SDHQKKKHEI 840 CLEQKENLDP THSYQKDEGA SMEAKARISS KETNTSIFQA KKEQCATAIC APTKLDAHVT 900 ENEPPAGVLV EHNTNDMLLF STDQDGHPVN GHMRTAARSL EDQTFTSFEI TSNKGHSDAR 960 SESLSDLSAP LSPRVGGSKL EQRQVPITSA QRALSVHPSA VSVEKHGSSI DMDLENLNIF 1020 ADTPGIKRGI ESPSAWKSPW FMNSLLPGHR IDTDITFEDI GYFVSPGDRT YDAIGLMRQL 1080 SEHTASAVAE AQEVLASGSP GVAFDKRHSG KEDFQKENIQ SDKELGDHPV TPKVMFSLDR 1140 LSSESTFLMS VIDLPSALTF PLGHPPLAWV DVILHKSASK LSYATWAADL APSNTNFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 219 | 283 | 46 | 110 | B-MYB |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008800072.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Refseq | XP_008800147.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Refseq | XP_026663930.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A2H3ZVS8 | 0.0 | A0A2H3ZVS8_PHODC; transcription factor MYB3R-1-like | ||||
STRING | XP_008800072.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 4e-75 | Homeodomain-like protein |