PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1136451g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 31959.2 Da PI: 6.7814 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ Ed++l d++k +G g W+ + + g++R++k+c++rw++yl PDK_30s1136451g001 14 RGAWSVHEDKILTDYIKAHGEGKWNVLSTRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.4e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ PDK_30s1136451g001 67 RGNISHEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 78999*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.748 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.25E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.032 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.32E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGRRACCSKE GLNRGAWSVH EDKILTDYIK AHGEGKWNVL STRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT KLSKEVKGIP 120 QRFINGERVQ SKSKERKAVA GLKAEAPKEL GEQSHPVIRP KAVRCTKVYS PPQQDDKMAD 180 RCLEPLSNKH ALESIPEDVD PFADFDMEGL LSEVHDDDFL QVGMDEPRED SNGVRGQDGL 240 IEMPSTCSDL SCHFHGAMLE EWSVGDGLQP NLAPEINALA SLLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 8e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017697924.1 | 0.0 | transcription factor TT2-like isoform X3 | ||||
TrEMBL | A0A2H3ZNE5 | 0.0 | A0A2H3ZNE5_PHODC; transcription factor TT2-like isoform X3 | ||||
STRING | XP_008787967.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 9e-62 | MYB family protein |