PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1134651g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family CO-like
Protein Properties Length: 374aa    MW: 40911.8 Da    PI: 4.92
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1134651g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.6e-06343438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        + C+ ++e++   +C+ +   lC +C  + H+       H+
  PDK_30s1134651g003  3 PLCDFCGEQRSVVYCRPDAASLCLSCDRNVHSAnalsrrHS 43
                        68*****************************6566666676 PP

2zf-B_box19.22.6e-064688439
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                         +C+++  ++++  C + ++ lC++C  ++H g       Ht+
  PDK_30s1134651g003 46 LMCDRCITQPAIVRCIEENVSLCQNCDWNGHGGsaschkkHTI 88
                        68****************************8557778555776 PP

3CCT621.8e-21320363144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+ a++RYkeK+k R+FeKkirY+sRKa+A+ R RvKGrFvk+ 
  PDK_30s1134651g003 320 RDSAVMRYKEKKKIRQFEKKIRYASRKARADVRRRVKGRFVKAG 363
                         899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.485147IPR000315B-box-type zinc finger
SMARTSM003364.5E-10147IPR000315B-box-type zinc finger
CDDcd000212.91E-8347No hitNo description
CDDcd000210.005174778No hitNo description
PROSITE profilePS5101715.299320362IPR010402CCT domain
PfamPF062033.8E-16320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGPLCDFCGE QRSVVYCRPD AASLCLSCDR NVHSANALSR RHSRTLMCDR CITQPAIVRC  60
IEENVSLCQN CDWNGHGGSA SCHKKHTINS YTGCPSAAEL SRIWSFVLEF PPMLDSNCEQ  120
GMGLMSINDN SVSNFWGAPE SSSTIDIAST GKMDDMESAN KLNPRIVSSS ITAVNPMICG  180
ADQPAGSVDS TTPKDDLYDD FNMDDVDLTF GNYEELFGAS HSTAEQLFDD AGIDSFFELK  240
EINAISADSV MPNLGSKADP NLCFPGRQAR SSLSLSFSGL TGESSAGDYQ DCGMSSMLFM  300
GEPPWCPTGP ESSSYTPAGR DSAVMRYKEK KKIRQFEKKI RYASRKARAD VRRRVKGRFV  360
KAGEAYDYDP LCQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800277.10.0zinc finger protein CONSTANS-LIKE 10-like isoform X2
RefseqXP_008800279.10.0zinc finger protein CONSTANS-LIKE 10-like isoform X2
RefseqXP_008800280.10.0zinc finger protein CONSTANS-LIKE 10-like isoform X2
SwissprotQ9SSE51e-121COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2H3YL690.0A0A2H3YL69_PHODC; zinc finger protein CONSTANS-LIKE 10-like isoform X2
STRINGXP_008800276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-91CONSTANS-like 9