PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1134651g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 374aa MW: 40911.8 Da PI: 4.92 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.8 | 1.6e-06 | 3 | 43 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++e++ +C+ + lC +C + H+ H+ PDK_30s1134651g003 3 PLCDFCGEQRSVVYCRPDAASLCLSCDRNVHSAnalsrrHS 43 68*****************************6566666676 PP | |||||||
2 | zf-B_box | 19.2 | 2.6e-06 | 46 | 88 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +C+++ ++++ C + ++ lC++C ++H g Ht+ PDK_30s1134651g003 46 LMCDRCITQPAIVRCIEENVSLCQNCDWNGHGGsaschkkHTI 88 68****************************8557778555776 PP | |||||||
3 | CCT | 62 | 1.8e-21 | 320 | 363 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k R+FeKkirY+sRKa+A+ R RvKGrFvk+ PDK_30s1134651g003 320 RDSAVMRYKEKKKIRQFEKKIRYASRKARADVRRRVKGRFVKAG 363 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.485 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.5E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.91E-8 | 3 | 47 | No hit | No description |
CDD | cd00021 | 0.00517 | 47 | 78 | No hit | No description |
PROSITE profile | PS51017 | 15.299 | 320 | 362 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.8E-16 | 320 | 362 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MGPLCDFCGE QRSVVYCRPD AASLCLSCDR NVHSANALSR RHSRTLMCDR CITQPAIVRC 60 IEENVSLCQN CDWNGHGGSA SCHKKHTINS YTGCPSAAEL SRIWSFVLEF PPMLDSNCEQ 120 GMGLMSINDN SVSNFWGAPE SSSTIDIAST GKMDDMESAN KLNPRIVSSS ITAVNPMICG 180 ADQPAGSVDS TTPKDDLYDD FNMDDVDLTF GNYEELFGAS HSTAEQLFDD AGIDSFFELK 240 EINAISADSV MPNLGSKADP NLCFPGRQAR SSLSLSFSGL TGESSAGDYQ DCGMSSMLFM 300 GEPPWCPTGP ESSSYTPAGR DSAVMRYKEK KKIRQFEKKI RYASRKARAD VRRRVKGRFV 360 KAGEAYDYDP LCQA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008800277.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10-like isoform X2 | ||||
Refseq | XP_008800279.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10-like isoform X2 | ||||
Refseq | XP_008800280.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10-like isoform X2 | ||||
Swissprot | Q9SSE5 | 1e-121 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2H3YL69 | 0.0 | A0A2H3YL69_PHODC; zinc finger protein CONSTANS-LIKE 10-like isoform X2 | ||||
STRING | XP_008800276.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07650.4 | 3e-91 | CONSTANS-like 9 |