PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1133891g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26094.4 Da    PI: 7.7139
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1133891g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.6e-2090145156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +rk+ ++tk+ql+ Le+ F+++++++  +++eLA++l+L  rqV vWFqNrRa+ k
  PDK_30s1133891g002  90 KRKKLRLTKQQLTLLENSFQEHSTLNPPRKQELADQLNLRPRQVEVWFQNRRARTK 145
                         79999*************************************************98 PP
2HD-ZIP_I/II113.41.4e-3691179189
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         +kk+rl+k+q++lLE+sF+e+++L+p rK+ela +L+l+prqv+vWFqnrRARtk+kq+E d e+L +++++l++en+rL++e eeL++
  PDK_30s1133891g002  91 RKKLRLTKQQLTLLENSFQEHSTLNPPRKQELADQLNLRPRQVEVWFQNRRARTKSKQTELDREFLNKCCENLSNENQRLKRELEELKS 179
                         69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-2066148IPR009057Homeodomain-like
SuperFamilySSF466898.55E-2176149IPR009057Homeodomain-like
PROSITE profilePS5007118.85287147IPR001356Homeobox domain
SMARTSM003891.1E-1889151IPR001356Homeobox domain
CDDcd000862.66E-1890148No hitNo description
PfamPF000461.8E-1790145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
SMARTSM003407.4E-15147190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEEDECNVSL GLAIGGGGYS TSNQSRDGGR KPPVQFHILF PPRPKGEEEE EEPTIEERPA  60
NKSGSKNIDE EEDTSTNDVS GGVSCNQAGK RKKLRLTKQQ LTLLENSFQE HSTLNPPRKQ  120
ELADQLNLRP RQVEVWFQNR RARTKSKQTE LDREFLNKCC ENLSNENQRL KRELEELKSM  180
KPGCPFYVGI PKVATLTLCP SCERTMAAGG QKGIGALDVM KSLRVPVNNG LVGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARTKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781928.11e-140homeobox-leucine zipper protein HAT22-like
SwissprotP466652e-50HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2H3XCX21e-138A0A2H3XCX2_PHODC; homeobox-leucine zipper protein HAT22-like
STRINGXP_008781928.11e-139(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-45homeobox from Arabidopsis thaliana