PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1133011g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 191aa MW: 21978.6 Da PI: 6.9178 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.8 | 6.9e-20 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++v+ +G + W+t a++ g++R++k+c++rw++yl PDK_30s1133011g004 9 KGAWTAEEDQKLVEYVRAHGDKKWRTLAAKAGLNRCGKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.8e-17 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l PDK_30s1133011g004 62 RGNISQDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 107 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.488 | 4 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-16 | 8 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.52E-30 | 8 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-18 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.83E-12 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 20.255 | 61 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-16 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 62 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 64 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-11 | 66 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MATHSIVNKG AWTAEEDQKL VEYVRAHGDK KWRTLAAKAG LNRCGKSCRL RWLNYLRPGI 60 KRGNISQDEE DLIIRLHNLL GNRWSLIAGR LPGRTDNEIK NHWNTHLSRR PLTIDDLNLQ 120 QHRKHEDGYG HSHPSKTPIE PSLGFNSGVS EEDRFEAWLP YHDAELFDAW ADLSGSDFDV 180 EHLFDFMSMP G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-31 | 9 | 110 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017700090.1 | 1e-109 | transcription repressor MYB5-like | ||||
Swissprot | Q38851 | 2e-53 | MYB6_ARATH; Transcription repressor MYB6 | ||||
Swissprot | Q9SZP1 | 4e-53 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A2H3ZUJ9 | 1e-108 | A0A2H3ZUJ9_PHODC; transcription repressor MYB5-like | ||||
STRING | XP_008778866.1 | 2e-97 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17778 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 9e-56 | myb domain protein 6 |