PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1129411g009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Nin-like | ||||||||
Protein Properties | Length: 940aa MW: 102385 Da PI: 5.5455 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 87.2 | 1.4e-27 | 573 | 622 | 2 | 51 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek+isl++l++yF ++kdAAk++gvc+T+LKriCRq+GI RWP+Rki++ PDK_30s1129411g009 573 EKNISLSVLQRYFPCSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINK 622 89**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.005 | 557 | 644 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.6E-23 | 575 | 622 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.36E-24 | 830 | 925 | No hit | No description |
SMART | SM00666 | 1.3E-23 | 841 | 923 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 23.755 | 841 | 923 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.6E-23 | 842 | 922 | No hit | No description |
Pfam | PF00564 | 5.6E-18 | 842 | 922 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 940 aa Download sequence Send to blast |
MDGFSPIDSG TGSAEDPFGF LALANFDGFG EPFSPSTADQ VCSALSYSAA AQLMPRNWVS 60 NGLPKISAAQ GNDAFTGDGD VSADACSSSR EVASPRTSMQ FVFSPNCSGL EGINMSSSYF 120 AFDDISGEGT SFVPKPIAGF SLPERMLRAL SLFKESSCGG ILAQVWMPIK RGDLYMLSTS 180 EQPFLPDQSL AGYREISRQF TFAAKEAPGL FPGLPGRVFI SGKPEWTPNV AYYNRFEYLR 240 VDHAVRHDVR GSIAVPVFDP SKASCCAVLE LVMTREKLDF DMEMDNVCHA LEAVNLKTTK 300 TRTHQQNLTK SQKSAFTEIL DVLRAVSLAH MLPLALTWIP FFIDCGSIDE CMEDDVQNVQ 360 SSLRKKTMLR IQETACYVND TRMQSFLHAC AQHDLEKGQG IAGKALQSNH PFFSPDVKDY 420 DICEYPLAHH ARKYGLCAAV AIRLRSTYTG NDDYILEFFL PVSCRGSEEQ QLLLNNLSGT 480 MKTICKSLRT VSDAEIFGAD ITRVGINRGE GIGSSSTDLS AKCSQLDSDN ELTTEKPFEN 540 QIMRSNEHGG SAFHEQSKSS STRHLEKKRS TTEKNISLSV LQRYFPCSLK DAAKSIGVCP 600 TTLKRICRQH GILRWPSRKI NKGVEGALNY DPAAGCLVAA VSLPEKPSMI TLEPSGRDCL 660 PASSAPQVAA EPSIGKSEPN YSSLDGRQQE TLSQLKLPNV HKCEGSELHV PSDGCSNECK 720 STCADGLLQQ ANTEGTPSWP TNSKDIFRSS YLTKETGCQH AFGKGGSTLQ SLECQIMLRG 780 SSSTEAVDEM NAKIYADDGI IEHSHPSSSS MTDSSNGSAS SHPTFVKSSN SMAAVTVSGS 840 AITVKATYKD DTVRFKFLPS MGCHRLFEEV GKRFRLLAGT FQLKYMDDEE EWVTLASDSD 900 LQECIEVLEY IGSHSVKLQV RDAASAIGSS GSSDCLLMES |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791813.1 | 0.0 | protein NLP2-like isoform X2 | ||||
Swissprot | Q0JC27 | 0.0 | NLP2_ORYSJ; Protein NLP2 | ||||
TrEMBL | A0A2H3Y0Z2 | 0.0 | A0A2H3Y0Z2_PHODC; protein NLP2-like isoform X2 | ||||
STRING | XP_008791812.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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