PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1129411g009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Nin-like
Protein Properties Length: 940aa    MW: 102385 Da    PI: 5.5455
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1129411g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.21.4e-27573622251
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                         ek+isl++l++yF  ++kdAAk++gvc+T+LKriCRq+GI RWP+Rki++
  PDK_30s1129411g009 573 EKNISLSVLQRYFPCSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINK 622
                         89**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.005557644IPR003035RWP-RK domain
PfamPF020423.6E-23575622IPR003035RWP-RK domain
SuperFamilySSF542773.36E-24830925No hitNo description
SMARTSM006661.3E-23841923IPR000270PB1 domain
PROSITE profilePS5174523.755841923IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.6E-23842922No hitNo description
PfamPF005645.6E-18842922IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MDGFSPIDSG TGSAEDPFGF LALANFDGFG EPFSPSTADQ VCSALSYSAA AQLMPRNWVS  60
NGLPKISAAQ GNDAFTGDGD VSADACSSSR EVASPRTSMQ FVFSPNCSGL EGINMSSSYF  120
AFDDISGEGT SFVPKPIAGF SLPERMLRAL SLFKESSCGG ILAQVWMPIK RGDLYMLSTS  180
EQPFLPDQSL AGYREISRQF TFAAKEAPGL FPGLPGRVFI SGKPEWTPNV AYYNRFEYLR  240
VDHAVRHDVR GSIAVPVFDP SKASCCAVLE LVMTREKLDF DMEMDNVCHA LEAVNLKTTK  300
TRTHQQNLTK SQKSAFTEIL DVLRAVSLAH MLPLALTWIP FFIDCGSIDE CMEDDVQNVQ  360
SSLRKKTMLR IQETACYVND TRMQSFLHAC AQHDLEKGQG IAGKALQSNH PFFSPDVKDY  420
DICEYPLAHH ARKYGLCAAV AIRLRSTYTG NDDYILEFFL PVSCRGSEEQ QLLLNNLSGT  480
MKTICKSLRT VSDAEIFGAD ITRVGINRGE GIGSSSTDLS AKCSQLDSDN ELTTEKPFEN  540
QIMRSNEHGG SAFHEQSKSS STRHLEKKRS TTEKNISLSV LQRYFPCSLK DAAKSIGVCP  600
TTLKRICRQH GILRWPSRKI NKGVEGALNY DPAAGCLVAA VSLPEKPSMI TLEPSGRDCL  660
PASSAPQVAA EPSIGKSEPN YSSLDGRQQE TLSQLKLPNV HKCEGSELHV PSDGCSNECK  720
STCADGLLQQ ANTEGTPSWP TNSKDIFRSS YLTKETGCQH AFGKGGSTLQ SLECQIMLRG  780
SSSTEAVDEM NAKIYADDGI IEHSHPSSSS MTDSSNGSAS SHPTFVKSSN SMAAVTVSGS  840
AITVKATYKD DTVRFKFLPS MGCHRLFEEV GKRFRLLAGT FQLKYMDDEE EWVTLASDSD  900
LQECIEVLEY IGSHSVKLQV RDAASAIGSS GSSDCLLMES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791813.10.0protein NLP2-like isoform X2
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A2H3Y0Z20.0A0A2H3Y0Z2_PHODC; protein NLP2-like isoform X2
STRINGXP_008791812.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]