PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1125291g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 28834.8 Da PI: 6.611 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.3 | 1.1e-30 | 59 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsek..AtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+++ AtPk +l+lm+vkgL+++hvkSHLQ+YR+ PDK_30s1125291g001 59 PRLRWTPELHLCFVHAVERLGGQDRagATPKMVLQLMNVKGLSIAHVKSHLQMYRS 114 9***********************9445***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.666 | 55 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-29 | 55 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-15 | 56 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-22 | 58 | 116 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.9E-9 | 60 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGSMSSESSR KSLSKVDEVE EDGGNSLRYG GSSSNSTVEE SERKASSGAV RQYVRSKNPR 60 LRWTPELHLC FVHAVERLGG QDRAGATPKM VLQLMNVKGL SIAHVKSHLQ MYRSKKIDES 120 GQASHELYEA SRLHDYGLGT THYRPQERET YFITQIQERP ATNPQGQSSV RWKADDHGPD 180 LNLSLSIGPR QEKKQTWGEE EEEEEEVDSS LSLSLFSPSR IERCSGDVEK ASKHNRWEEE 240 VGKGKNARAT STLDLTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-17 | 60 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-17 | 60 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-17 | 60 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-17 | 60 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-17 | 60 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-17 | 60 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-17 | 60 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-17 | 60 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-17 | 60 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-17 | 60 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-17 | 60 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-17 | 60 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026664016.1 | 3e-71 | probable transcription factor KAN4 isoform X1 | ||||
TrEMBL | A0A3Q0IAJ9 | 7e-70 | A0A3Q0IAJ9_PHODC; probable transcription factor KAN4 isoform X1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-40 | G2-like family protein |