PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1122321g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 338aa    MW: 37272.7 Da    PI: 8.1677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1122321g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-1760105147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l ++v+q+G+++W++Ia+++  gR++k+c++rw++ 
  PDK_30s1122321g002  60 RGHWRPSEDARLRELVAQYGPHNWNLIAEKLE-GRSGKSCRLRWFNQ 105
                         899*****************************.***********996 PP
2Myb_DNA-binding57.14.3e-18113156247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+  
  PDK_30s1122321g002 113 TSFTEEEEERLLAAHRFHGNK-WALIARFFP-GRTDNAVKNHWHVM 156
                         689******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.84155106IPR017930Myb domain
SMARTSM007171.7E-1459108IPR001005SANT/Myb domain
SuperFamilySSF466891.46E-2859153IPR009057Homeodomain-like
PfamPF002491.9E-1660105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2661113IPR009057Homeodomain-like
CDDcd001675.19E-1463104No hitNo description
PROSITE profilePS5129426.583107161IPR017930Myb domain
SMARTSM007174.8E-16111159IPR001005SANT/Myb domain
PfamPF002494.1E-15113155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-21114159IPR009057Homeodomain-like
CDDcd001676.56E-8123157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLHKREAIYF SGHARGSIDI WGPDQGSPGA EKSGGGGEDE GENAGGKRDN EGGQPKLCIR  60
GHWRPSEDAR LRELVAQYGP HNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NKTSFTEEEE  120
ERLLAAHRFH GNKWALIARF FPGRTDNAVK NHWHVMMARR QREMCNGYRR RKLSPLNPTN  180
PCVPILPRMM ELVGGGNNNA HSGESTVTTN RDESASSSTG LSPNSSKNML IPGFLNRFGP  240
PELPQHFQFL MGSQEKLVAA TNGCNGKFGT AAGCFYQSAP MLMTMGVDQA GHSEATSEAS  300
TTESVANPRN NAIMHAERDN DGEKMTFTFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-34571601104C-Myb DNA-Binding Domain
1msf_C6e-34571601104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792516.10.0transcription factor CSA-like
TrEMBLA0A2H3Y2W20.0A0A2H3Y2W2_PHODC; transcription factor CSA-like
STRINGXP_008792516.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.12e-61myb domain protein 117