PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1116031g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 239aa    MW: 26855.4 Da    PI: 8.8183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1116031g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEde+l+ +++++G+g +W + +r++g++R++k+c++rw++yl
  PDK_30s1116031g003 14 KGPWSPEEDEKLKAYIEEHGTGgNWIALPRKIGLNRCGKSCRLRWLNYL 62
                        79*********************************************97 PP

2Myb_DNA-binding37.74.8e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  PDK_30s1116031g003  69 GGFSEEEDHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWHT 111
                         569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.363966IPR017930Myb domain
SuperFamilySSF466895.85E-2811109IPR009057Homeodomain-like
SMARTSM007171.8E-141364IPR001005SANT/Myb domain
PfamPF002497.7E-171462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-251569IPR009057Homeodomain-like
CDDcd001678.56E-111662No hitNo description
SMARTSM007172.1E-967115IPR001005SANT/Myb domain
PROSITE profilePS5129416.60567117IPR017930Myb domain
PfamPF002491.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDEKLKAYIE EHGTGGNWIA LPRKIGLNRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWH TKLKKKLLGG  120
RRRERPHSCH LSSTDSKEPS NDIDHNKGLQ SLSTSALERL QLHLQLQGLH HPFAFHNNPL  180
PWPNLLPPGE RILQSQSSNI SNETVVKPPP STMSPKEPIS DSVISTNSLQ IAEGNDVNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113122KKKLLGGRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801982.11e-139transcription factor MYB36
SwissprotQ9FKL22e-95MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2H3YQ531e-138A0A2H3YQ53_PHODC; transcription factor MYB36
STRINGXP_008801982.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-76myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]