PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1113891g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 988aa MW: 112841 Da PI: 8.7122

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1113891g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.3	1.1e-17	65	150	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA ++GF +++ +s++ ++g++ ++ C+k gk + +++ ++++++++t+C a+++++ + dg +++++ l+HnH+l+p PDK_30s1113891g001 65 RFYDKYACRTGFGIKVLNSTYY-EDGRCRYLWLSCNKDGKVKYKTDF----HSSKPTKKTNCMARIQLRHRADGLLHIKQVILDHNHPLSP 150 5*************999887.8899***********99877....89999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-14	65	150	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-33	255	348	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.532	542	578	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.8E-6	542	575	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-5	553	580	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MEEQSDDDLT IVSVNGLREG QELAMVNAQE TDVRKESEAT QEMNGGDEDV PKLGMTFQTP 60 EEAFRFYDKY ACRTGFGIKV LNSTYYEDGR CRYLWLSCNK DGKVKYKTDF HSSKPTKKTN 120 CMARIQLRHR ADGLLHIKQV ILDHNHPLSP GTAKSYHTRK RKRFLENDDG VMTPLDWSYP 180 EGGFGRVRKR GTGEKKCELR LEKGDGEAIH QFFIGMQTKD SFFFHSMDLD EEGRLRNVFW 240 ADGRSRTQYQ YFGEVILFDT TYLIDKYDVP LVSFVGVNHH GQKVLLGCGL LSDESNETYI 300 WLFKTWLSCM FECPPIAIIT DRCNALQEAV AEVFPKAHHR QCLWHIMKRI PENLQGRVDY 360 KEIKKTLKKV TYDSLRTDEF EEDWRKMVEK YKLENNEWLE LLYEDRRYWA PVYVKETFWA 420 GMSVTRRGES MKSFFDEYVH YKITLRQFLR KYEMVVQNKY EKEVQADIEL FHKSPQLITQ 480 LYMEEQLGKA YTFDVFKKFQ AEIRALIYCV SSLVKVDGQV YTFKVKERIR VKNSKHMENK 540 FYEVLYNEKE LEVSCICCSF QFRGILCRHA LSVLNFQNVV EIPSKYILER WRKDFKRMHA 600 LACFPNEVVA DGPLDHHGNF YKHCLKLSEI GLMSDEKYEF ALKVVNEAIQ KLLANDSICD 660 VKQTENVSHE ALSNCNMVNV NVNGDRNRGI ESNGFHNPVQ VRETVNHPHF EFFQNRGRND 720 QQSAGYRSGM DWGFQQYFRG RAVTVPRTTI MGFNSQRSGR SAFPRKAGEP LSECTLWAAR 780 CPRMLCAARA RCGQRSGSVR ALPAHAVRCG QRAARACCAL WAARCPRMLC AVGSALPAHA 840 VRCGQRAARA CCALWAARCP RMLCAVGSAL PAHAVRCGQR AARACCALWA ARCPRMLCAV 900 GSALPAHAVR CGQRAARACC ALWAARCPRM LCAVGSALPA HAVRCGQRAA RACCALPTLA 960 VGNAPVHAGG NACDALCYDR FGTGLNRS

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MEEQSDDDLT IVSVNGLREG QELAMVNAQE TDVRKESEAT QEMNGGDEDV PKLGMTFQTP  60
EEAFRFYDKY ACRTGFGIKV LNSTYYEDGR CRYLWLSCNK DGKVKYKTDF HSSKPTKKTN  120
CMARIQLRHR ADGLLHIKQV ILDHNHPLSP GTAKSYHTRK RKRFLENDDG VMTPLDWSYP  180
EGGFGRVRKR GTGEKKCELR LEKGDGEAIH QFFIGMQTKD SFFFHSMDLD EEGRLRNVFW  240
ADGRSRTQYQ YFGEVILFDT TYLIDKYDVP LVSFVGVNHH GQKVLLGCGL LSDESNETYI  300
WLFKTWLSCM FECPPIAIIT DRCNALQEAV AEVFPKAHHR QCLWHIMKRI PENLQGRVDY  360
KEIKKTLKKV TYDSLRTDEF EEDWRKMVEK YKLENNEWLE LLYEDRRYWA PVYVKETFWA  420
GMSVTRRGES MKSFFDEYVH YKITLRQFLR KYEMVVQNKY EKEVQADIEL FHKSPQLITQ  480
LYMEEQLGKA YTFDVFKKFQ AEIRALIYCV SSLVKVDGQV YTFKVKERIR VKNSKHMENK  540
FYEVLYNEKE LEVSCICCSF QFRGILCRHA LSVLNFQNVV EIPSKYILER WRKDFKRMHA  600
LACFPNEVVA DGPLDHHGNF YKHCLKLSEI GLMSDEKYEF ALKVVNEAIQ KLLANDSICD  660
VKQTENVSHE ALSNCNMVNV NVNGDRNRGI ESNGFHNPVQ VRETVNHPHF EFFQNRGRND  720
QQSAGYRSGM DWGFQQYFRG RAVTVPRTTI MGFNSQRSGR SAFPRKAGEP LSECTLWAAR  780
CPRMLCAARA RCGQRSGSVR ALPAHAVRCG QRAARACCAL WAARCPRMLC AVGSALPAHA  840
VRCGQRAARA CCALWAARCP RMLCAVGSAL PAHAVRCGQR AARACCALWA ARCPRMLCAV  900
GSALPAHAVR CGQRAARACC ALWAARCPRM LCAVGSALPA HAVRCGQRAA RACCALPTLA  960
VGNAPVHAGG NACDALCYDR FGTGLNRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008778473.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2H3X569	0.0	A0A2H3X569_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008778473.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-141	FAR1-related sequence 6