PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1111671g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 364aa    MW: 40415 Da    PI: 5.2787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1111671g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18127176255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++  +++++g
  PDK_30s1111671g005 127 QYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFNTAEEAARAYDVEARRIRG 176
                         69*******.**********72....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.999127184IPR001471AP2/ERF domain
CDDcd000184.98E-32127186No hitNo description
SMARTSM003808.6E-38127190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32127185IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-22127184IPR016177DNA-binding domain
PRINTSPR003671.1E-11128139IPR001471AP2/ERF domain
PfamPF008473.4E-11128176IPR001471AP2/ERF domain
PRINTSPR003671.1E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MCGGAIIADL RPVGTRRLTA DHLWPALKKG ADNGGRRTGR KHEVKGGGGG GKKKGRKQEV  60
VEFDDDFEAD FEDFKDESEE DEEEEIDVKP SAFVSKAPFS GEGSTTLKSV EFNGCAARST  120
KRKRKNQYRG IRQRPWGKWA AEIRDPHKGV RVWLGTFNTA EEAARAYDVE ARRIRGKKAK  180
VNFPEAPASA QKRNQKPTLQ APKPALSEEQ KSKPEYMNSL PLLESSPPSG GTGFLNFLSD  240
QGSNSIDCLD FGWEHETKNP EITSVLAPMI TEGDESRFLE HGRPQKNLKS QSGEAVPAEE  300
NSALKLSEEL SAYESYMKFL QIPYLEGSTY ESIDSLFSCE VAQDGLNPLN LWSFDDLPTE  360
SSIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20127184563ATERF1
3gcc_A2e-20127184563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800471.10.0ethylene-responsive transcription factor 1-like isoform X1
TrEMBLA0A2H3YLL80.0A0A2H3YLL8_PHODC; ethylene-responsive transcription factor 1-like isoform X1
STRINGXP_008800471.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-48related to AP2 12