PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1111641g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 22340.7 Da    PI: 8.709
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1111641g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.59.7e-25958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien s+rq tf kRr g++KKA ELS+LCda+ ++++fss+gklyey 
  PDK_30s1111641g002  9 KRIENPSQRQSTFYKRRDGLFKKARELSILCDADLLLLLFSSSGKLYEYH 58
                        79***********************************************6 PP
2K-box24.79.9e-10911702099
               K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         e++  +k  + L++e+R ++ +  +  sl  L  Le +Le +++k+Rs K++ +  +i++l ++ ++ q+e  +L  k++
  PDK_30s1111641g002  91 EMEEGRKLCDLLESELRFMKVDANQHYSLPVLDILEGNLEAAISKVRSEKDRKIAGEIDHLENMVRDRQQEGYNLCDKVA 170
                         5555667778888888888888888899999****************************************999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.67E-27180IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.24161IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.61585175IPR002487Transcription factor, K-box
PfamPF014861.9E-1089169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGRGRREIKR IENPSQRQST FYKRRDGLFK KARELSILCD ADLLLLLFSS SGKLYEYHTP  60
SVPSAKELIK RYEVATQNKI LRDRCLERNA EMEEGRKLCD LLESELRFMK VDANQHYSLP  120
VLDILEGNLE AAISKVRSEK DRKIAGEIDH LENMVRDRQQ EGYNLCDKVA RAQGLNDTAV  180
PLKQLDLKLG TCIS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812160.11e-137MADS-box transcription factor 32-like
SwissprotQ8S1512e-78MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A2H3ZDG51e-135A0A2H3ZDG5_PHODC; MADS-box transcription factor 32-like
STRINGXP_008812160.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-15MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]