PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1110641g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Dof

Protein Properties

Length: 464aa MW: 50523.1 Da PI: 7.2599

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1110641g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	110	170	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s +tkfCyynny+++qPr+fC+ C+ryWt+GG++rnvPvG+grrknk+s PDK_30s1110641g001 110 PDKILACPRCSSLDTKFCYYNNYNVNQPRHFCRHCQRYWTAGGTMRNVPVGAGRRKNKNSM 170 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	103	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.174	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MAESRDPAIK LFGKTIPLPA GGEAPAVSRD DEREKDDAKG SSDREAAHES KGKDHDSPNS 60 EGKSEPPISS TGSETPKNSS DQETIPAKNL QPEEQKNEAN TSQEKTTKKP DKILACPRCS 120 SLDTKFCYYN NYNVNQPRHF CRHCQRYWTA GGTMRNVPVG AGRRKNKNSM SQFRHISLSD 180 ASFQTARPEA PEPVHHTPLK PNGTVLSFGS DTPLCESMAS VLNLAEKTMK NCNRNGFHRP 240 EEQMVPFPAV ENGDEQSTGS SVTASNSTDD GSGANIREPV VQGCRGFPAQ FPYINGSPWP 300 YLWSPVPAFC PSSVPMPFHP APAYWGCPVA GTWSIPWPLP LASSDNGSSG SGPNSPTLGK 360 HSREGEMLDQ ANSEKESRPK QGNQERCLWI PKTLRIDDPE EAAKSSIWAT LGFKKDSADR 420 ISGAGLFKAF QKKAEVKNLI AETSQVLHAN PAALSRSLNF LESS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MAESRDPAIK LFGKTIPLPA GGEAPAVSRD DEREKDDAKG SSDREAAHES KGKDHDSPNS  60
EGKSEPPISS TGSETPKNSS DQETIPAKNL QPEEQKNEAN TSQEKTTKKP DKILACPRCS  120
SLDTKFCYYN NYNVNQPRHF CRHCQRYWTA GGTMRNVPVG AGRRKNKNSM SQFRHISLSD  180
ASFQTARPEA PEPVHHTPLK PNGTVLSFGS DTPLCESMAS VLNLAEKTMK NCNRNGFHRP  240
EEQMVPFPAV ENGDEQSTGS SVTASNSTDD GSGANIREPV VQGCRGFPAQ FPYINGSPWP  300
YLWSPVPAFC PSSVPMPFHP APAYWGCPVA GTWSIPWPLP LASSDNGSSG SGPNSPTLGK  360
HSREGEMLDQ ANSEKESRPK QGNQERCLWI PKTLRIDDPE EAAKSSIWAT LGFKKDSADR  420
ISGAGLFKAF QKKAEVKNLI AETSQVLHAN PAALSRSLNF LESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008802580.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A2H3YR47	0.0	A0A2H3YR47_PHODC; cyclic dof factor 3-like
STRING	XP_008802580.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-96	cycling DOF factor 3