PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1109201g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 171aa MW: 18834.8 Da PI: 10.3178 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.8 | 3.9e-20 | 60 | 94 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++ PDK_30s1109201g004 60 CADCRTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 94 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.57E-13 | 54 | 94 | No hit | No description |
PROSITE profile | PS50114 | 13.033 | 54 | 90 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.2E-17 | 54 | 114 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.64E-14 | 59 | 111 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-16 | 59 | 94 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 7.3E-18 | 60 | 94 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 60 | 85 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MPAVRRHAGD LGAGSEPMSV ETIFEKEAIL DRVMDLCGEK ETGSIDLGSS RESSGELKSC 60 ADCRTTKTPL WRGGPSGPKS LCNACGIRYR KKRRAVLGLK EGERRERKQK REESSSTKDL 120 GGVSVKLRML GVGSEVLFKR RSLLERKKRR MGEVEEAAVL LMALSSGFLY A |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 138 | 148 | KRRSLLERKKR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008797400.1 | 6e-92 | GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 5e-31 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A2H3YE62 | 1e-90 | A0A2H3YE62_PHODC; GATA transcription factor 15-like | ||||
STRING | XP_008797400.1 | 2e-91 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-27 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|