PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1109201g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 171aa    MW: 18834.8 Da    PI: 10.3178
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1109201g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.83.9e-206094135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  PDK_30s1109201g004 60 CADCRTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 94
                        ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.57E-135494No hitNo description
PROSITE profilePS5011413.0335490IPR000679Zinc finger, GATA-type
SMARTSM004016.2E-1754114IPR000679Zinc finger, GATA-type
CDDcd002021.64E-1459111No hitNo description
Gene3DG3DSA:3.30.50.102.5E-165994IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.3E-186094IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406085IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MPAVRRHAGD LGAGSEPMSV ETIFEKEAIL DRVMDLCGEK ETGSIDLGSS RESSGELKSC  60
ADCRTTKTPL WRGGPSGPKS LCNACGIRYR KKRRAVLGLK EGERRERKQK REESSSTKDL  120
GGVSVKLRML GVGSEVLFKR RSLLERKKRR MGEVEEAAVL LMALSSGFLY A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138148KRRSLLERKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797400.16e-92GATA transcription factor 15-like
SwissprotQ8LG105e-31GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A2H3YE621e-90A0A2H3YE62_PHODC; GATA transcription factor 15-like
STRINGXP_008797400.12e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-27GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]