PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1106721g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 279aa    MW: 30877.9 Da    PI: 5.084
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1106721g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  PDK_30s1106721g001 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61
                        79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.319965IPR017930Myb domain
SMARTSM007172.6E-141363IPR001005SANT/Myb domain
PfamPF002497.5E-171461IPR001005SANT/Myb domain
SuperFamilySSF466892.48E-231588IPR009057Homeodomain-like
CDDcd001671.54E-111661No hitNo description
PROSITE profilePS500904.1356297IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-86597IPR009057Homeodomain-like
SMARTSM007175366108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNSMF SLLASLLTNL YFQESKAQLP LLLASNLLIS  120
FISMTQISVR LIVALGQKLA QCLIRAAREL EEEQDLEWKC FEKQPLRMLE IKDHRIDSFA  180
SFSMETTSVF GGESSSWLPE SSSIGTGSSG GEFGAGFTGM LLDSSDDRNS SDGRGDSDNL  240
EGGSCVEEEG KEGEENKNYW NSILKLVNST SPSSSPPVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-151297588B-MYB
1h8a_C4e-15129725108MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7D7R43e-72A0A2T7D7R4_9POAL; Uncharacterized protein
STRINGGSMUA_Achr10P29680_0016e-70(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.18e-58myb domain protein 16