PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1103751g021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GeBP | ||||||||
Protein Properties | Length: 333aa MW: 36544.4 Da PI: 4.3729 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 100.1 | 2e-31 | 44 | 141 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 rlw++e ei++LqG+++f+a++g+ +++ d+ fye +k++++++++k+ql+eK+rrLKkK+++ v++ ++ gk+++f+++h++ i++ PDK_30s1103751g021 44 ARLWTDEEEITILQGFLEFTARRGTtfASHQyDTGPFYEEIKQRLQLEFTKNQLIEKLRRLKKKYRNVVSRmRSMGKDFAFKSSHEKGIYD 134 69**********************99877778**************************************97889**************** PP DUF573 91 lskkiWg 97 +++ iW PDK_30s1103751g021 135 IARNIWS 141 ******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-29 | 45 | 141 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MPSVEEEQER AVFDDDVDDD DDDMEGDDSE EDEEEGYEDD DTEARLWTDE EEITILQGFL 60 EFTARRGTTF ASHQYDTGPF YEEIKQRLQL EFTKNQLIEK LRRLKKKYRN VVSRMRSMGK 120 DFAFKSSHEK GIYDIARNIW SANVKRAHDS DDDDLNTPNN SYTIEAISGP DGATTNSDRR 180 ISRSRRRFRR RAAEEATATA AAAAAAANPA TVGVPVTQVP SSSAAAIPGI IEETVKSCLS 240 PLFKELICSA TGGPLGPGLS GEAGILGPGL AAALSPMPFC LGGGPASLPG SGAAVDEKWK 300 KQQILELEVY LNRIELLRDQ IKSTLEELKS SGS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008800322.1 | 1e-165 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A2H3YLJ5 | 1e-163 | A0A2H3YLJ5_PHODC; probable transcription factor At3g04930 | ||||
STRING | XP_008800322.1 | 1e-164 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-46 | DNA-binding storekeeper protein-related transcriptional regulator |