PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1100981g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 844aa    MW: 97697.7 Da    PI: 8.5998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1100981g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.31.4e-2463147290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          YneY+k++GF +rk+  ++sk n+ i+  ++vCs++g  +++ k+     ++r  tr+gC a+lkvk++  +kw+vt++ +eHnHel 
  PDK_30s1100981g006  63 LYNEYSKQMGFGIRKKLCRRSKANNDIIAGWYVCSRQGAYARRGKT----ANPRFITRVGCPAELKVKRMAVKKWQVTDFIKEHNHELD 147
                         7*****************************************9988....99***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2163148IPR004330FAR1 DNA binding domain
PfamPF105513.1E-31247339IPR018289MULE transposase domain
PROSITE profilePS5096610.089537573IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-7546572IPR007527Zinc finger, SWIM-type
SMARTSM005757.3E-7548575IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MDAETSLGED DKEEEFREAS KKGDSIAAAK LNSSLATPNS TERINLEPFV GMIFESEVEA  60
YQLYNEYSKQ MGFGIRKKLC RRSKANNDII AGWYVCSRQG AYARRGKTAN PRFITRVGCP  120
AELKVKRMAV KKWQVTDFIK EHNHELDPEN ACLFRSHRKF QAPEQNLVEI VSRNVGIREQ  180
VNVVDKEQQR FLSAADTHAL HMHFMRMHSK NPAFSYAMDL DEKQRVRNAF WVDAICKVAY  240
THFGDAVMLD TTFLTNRFKM PLVSIVGVNH HGQPVLLGCG LLGDETPVSY VWLFKAWLEA  300
MSGQPPKALI TDRSNSITAA AAEVFPGTCH RFCLWHICKR VSEKLGYVWR TQANFMKKFY  360
KCIFDSLTED EFEKRWSKFI QHFSLMNDEW LQGLYDDRRK WVLVYLKDTF FAGMSISQRG  420
ESLNLFFDKQ VNRHTSLKEF LEKYEQDLES KYEDEAQEDR RSICIMPEER MHPSPFELQL  480
ANVYTRNIYE KFQGEVLGIS SVFASKIEED EESTIFAVKA YEVQEDSKDK KVKEREYRII  540
WNAEARRIYC ICRLFEFKGY LCRHALAVFL ASNVVEIPSH YILKRWTKDA KTINVLNAAL  600
NEKEDCSASI TQRFNDICVR CIKLAQEASL SKKSYDVALQ ALQEALEKVA YENNRPRRNI  660
QNYNPRGSTY YKTNEGSQAN NIGTPMLYVP NQLGTMLVVC NPQAFQMAST SNKKIKYGAE  720
KRGSKQKEHK SGDCMQFSHS VATSTEDQLN QEQSVNVANK NQDIRLLYML AVIELKCLQI  780
YQMRALLILA TEEFEQGASG FSKQGNGHIL QVRSKVGWRI WGCVVRVSKL RFWETCWYYK  840
KSFM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026660356.10.0protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_026660357.10.0protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_026660358.10.0protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_026660359.10.0protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_026660360.10.0protein FAR1-RELATED SEQUENCE 4-like
TrEMBLA0A3Q0I0F30.0A0A3Q0I0F3_PHODC; protein FAR1-RELATED SEQUENCE 4-like
STRINGXP_008789325.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-158FAR1 family protein