PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1100981g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 733aa    MW: 81663.4 Da    PI: 5.2763
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1100981g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-2070125156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r++ +++t+eq++e+e+lF+++++p++++r+ L+k+lgL+ rqVk+WFqNrR++ k
  PDK_30s1100981g002  70 RKQYHRHTTEQIREMEALFKESPHPDEKQRQLLSKQLGLSARQVKFWFQNRRTQIK 125
                         789999**********************************************9876 PP
2START2122.1e-662424661206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                         e+a++a +el+k+a+  ep+Wv+s+    e++n+de++++f+++ +       s+ea+r+sgvv+ +   lv+ ++d++ qW+  ++    
  PDK_30s1100981g002 242 EVANAASDELMKMATTLEPLWVRSVetgrEILNYDEYIREFSPEISsrghvrHSIEASRESGVVFLDISSLVKAFMDVN-QWKDLFPcmvs 331
                         68999**************************************9999********************************.****9999999 PP

                         EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
               START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                         ka+t++vi +       g++qlm+aelq+l+p+vp R+f+fvRy++ql+ ++w+ivdvSvd  +++  ++s+++++++pSg++ie+ +ngh
  PDK_30s1100981g002 332 KASTIDVIYNEngesgdGTIQLMFAELQMLTPIVPtREFYFVRYCKQLSPEKWAIVDVSVDKIEENI-DASLAKCRKRPSGCVIEDQANGH 421
                         ********99899****************************************************98.9********************** PP

                         EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         +kvtwvehv++++  ++ ++rs+v +gla+ga++w+atlq qce+
  PDK_30s1100981g002 422 CKVTWVEHVECQKCAVPTMYRSIVTNGLAFGARHWMATLQLQCER 466
                         *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2158121IPR009057Homeodomain-like
SuperFamilySSF466899.19E-2059125IPR009057Homeodomain-like
CDDcd000863.15E-1766125No hitNo description
PROSITE profilePS5007117.70267127IPR001356Homeobox domain
SMARTSM003897.9E-1769131IPR001356Homeobox domain
PfamPF000468.9E-1870125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PROSITE profilePS5084841.952233469IPR002913START domain
SuperFamilySSF559613.57E-31235466No hitNo description
CDDcd088755.96E-111237465No hitNo description
PfamPF018521.7E-54242466IPR002913START domain
SMARTSM002343.8E-67242466IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-5294450IPR023393START-like domain
SuperFamilySSF559613.98E-13500710No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MRLIAGVFRN IEVVEEEVEE GDEGSGGGSR GEPVEISSEN TGPGGQSDED GGDNGLADED  60
GEEGNKKKRR KQYHRHTTEQ IREMEALFKE SPHPDEKQRQ LLSKQLGLSA RQVKFWFQNR  120
RTQIKVPQAI QERHENSLLK SEIDKLRDEN RAMRQMINKA CCPNCGFATS SKDTAMTTEE  180
QQLRIENARL KAEDPGGRVF SLTSVIYQGD PEYLYRTKEP KNYLSTSLFG GFFGLEKSRI  240
LEVANAASDE LMKMATTLEP LWVRSVETGR EILNYDEYIR EFSPEISSRG HVRHSIEASR  300
ESGVVFLDIS SLVKAFMDVN QWKDLFPCMV SKASTIDVIY NENGESGDGT IQLMFAELQM  360
LTPIVPTREF YFVRYCKQLS PEKWAIVDVS VDKIEENIDA SLAKCRKRPS GCVIEDQANG  420
HCKVTWVEHV ECQKCAVPTM YRSIVTNGLA FGARHWMATL QLQCERIVFF MATNVPTKDS  480
NVIPTGVSTL AGRKSLLKFA QRMTSSFCQA IAASRNRTWT KASIRGGEDI RFTSRKNVND  540
PGEPTGVIVC AVSSTWLPVP STALFDYLRD ESRRTEWDIM LTGGPTATIA NLAKGQDRGN  600
SVLVHATKSA DKTSMWVLQD SSTNAYESMI VYAPVDIDEM QTVMTGRDSS NMAILPSGFS  660
ILPDELETRP LVITSKPEEK TTEGGGSLLT VGVQILANTS PLAKLTMESV ETASTLISCT  720
LQNIKKAFQC EDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16471NKKKRRKQ
26569KKKRR
36570KKKRRK
46670KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789333.10.0homeobox-leucine zipper protein GLABRA 2 isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2H3XVD80.0A0A2H3XVD8_PHODC; homeobox-leucine zipper protein GLABRA 2 isoform X1
STRINGXP_008789333.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]