PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1097111g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Nin-like
Protein Properties Length: 389aa    MW: 43327.4 Da    PI: 6.1299
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1097111g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.44.4e-26298347352
              RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          +++l dl  yF+lpi+dAAkeLg+c+T+LK+iCR++G++RWP+Rkiks+
  PDK_30s1097111g003 298 GSMQLRDLVDYFHLPIADAAKELGICTTALKKICRKHGMPRWPQRKIKSI 347
                         67899*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.803287367IPR003035RWP-RK domain
PfamPF020428.8E-24300347IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDSFQPFDNL PDSTEFLPQE DDVLQFLEFS DPDYTQPLAL PAPPDVESTM ELSGMMQDAS  60
FWDFDVQQPA NEQFAPADHG VGNFEALPPV NQVIPAATTP EVSPPAIDCS GCQALREVVH  120
SNGSQNMKLS IHGGPGTFYH AILDVYHNIH GFPRAAEQSY IEATINHSLI QCCNSTVLQQ  180
PTSQTSLLLS CFSSCKEMFP EPFQLVKYKM LLSKWRILRT RSFDWVKKFL INYGLDSLSV  240
FCDALCANMR YEVASTNAVN VSTSPESGLC QSRPIEVDRS HPVRTLKTGI AAQRERTGSM  300
QLRDLVDYFH LPIADAAKEL GICTTALKKI CRKHGMPRWP QRKIKSIDKR ISTLQRGLHA  360
EAGEGAARTQ VEIERLKVEK ARICAGLPP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5786279e-41AJ578627.1 Elaeis guineensis microsatellite DNA, clone mEgCIR3232.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791759.10.0uncharacterized protein LOC103708559 isoform X1
TrEMBLA0A2H3Y1410.0A0A2H3Y141_PHODC; uncharacterized protein LOC103708559 isoform X1
STRINGXP_008791759.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-14RWP-RK domain-containing protein