PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1094441g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 364aa MW: 39586.3 Da PI: 7.9687

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1094441g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.1e-31	194	249	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH++F++a++qLGGs+ AtPk+i+elmkv++Lt+++vkSHLQkYRl+ PDK_30s1094441g001 194 KARRCWSPDLHRQFIHALQQLGGSHAATPKQIRELMKVDDLTNDEVKSHLQKYRLH 249 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.873	191	251	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-27	192	252	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	192	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-26	194	249	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-6	196	247	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDLAERARRC HEYVEALEEE RRKIQVFPRE LPLCLQLVTE GSYLSLLFVR AFCGAFILGS 60 IRVQMGSSEE TVTDGPVLEE FIPLKPTSSS IEEEKGGSME MDQERSDNKP DWLRSVQLWS 120 QDPDHSLPKA EPPKKPIAVN AKKIGGAFRP FDREKHVPAP VPSAAAPASS TTVGGGSSGE 180 KEKDKEGQSQ PHRKARRCWS PDLHRQFIHA LQQLGGSHAA TPKQIRELMK VDDLTNDEVK 240 SHLQKYRLHS RRPSPAVQSS GTSSPPTPQY VVVGEIWVRP PDYAAAAVAT AAQPANGAGG 300 IYAPVASLPS DLRHQQQQVK QQSHRSPTGP LHSQGRCSGD DGAANSASPT TSSSSQTTTA 360 SPPF

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDLAERARRC HEYVEALEEE RRKIQVFPRE LPLCLQLVTE GSYLSLLFVR AFCGAFILGS  60
IRVQMGSSEE TVTDGPVLEE FIPLKPTSSS IEEEKGGSME MDQERSDNKP DWLRSVQLWS  120
QDPDHSLPKA EPPKKPIAVN AKKIGGAFRP FDREKHVPAP VPSAAAPASS TTVGGGSSGE  180
KEKDKEGQSQ PHRKARRCWS PDLHRQFIHA LQQLGGSHAA TPKQIRELMK VDDLTNDEVK  240
SHLQKYRLHS RRPSPAVQSS GTSSPPTPQY VVVGEIWVRP PDYAAAAVAT AAQPANGAGG  300
IYAPVASLPS DLRHQQQQVK QQSHRSPTGP LHSQGRCSGD DGAANSASPT TSSSSQTTTA  360
SPPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-12	194	252	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-12	194	252	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-12	194	247	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-12	194	247	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-12	194	247	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-12	194	247	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-12	194	252	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-12	194	252	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-12	194	252	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-12	194	252	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-12	194	252	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-12	194	252	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008799311.1	0.0	transcription factor NIGT1-like isoform X1
Swissprot	Q6Z869	6e-88	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A2H3YJ60	0.0	A0A2H3YJ60_PHODC; transcription factor NIGT1-like isoform X1
STRING	XP_008799311.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	8e-75	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]