PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1092571g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GRAS | ||||||||
Protein Properties | Length: 126aa MW: 14570.5 Da PI: 8.4615 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 50.1 | 4.9e-16 | 1 | 124 | 266 | 374 |
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse..............kaakqaklllr 342 a+fd l++ + r++++r+ E +l + i++++a+eg+er+ rh + Wr+ +++ G+ + +++e qa+ll + PDK_30s1092571g001 1 AFFDYLASFMDRDDKTRVATEGSFLWQGIRSIIAAEGSERVVRHVGISVWRSFFSRYGLVKTEMNEwshyyglvetemneWSHYQASLLGK 91 68******************************************************99987765431111111111110044569999999 PP GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ ++ +++++ ++l+lgWk+ pL+++SaW+ PDK_30s1092571g001 92 QFAnGHFCTLDKNGKALTLGWKGTPLLFLSAWK 124 999444467788888889**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.7E-13 | 1 | 124 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
AFFDYLASFM DRDDKTRVAT EGSFLWQGIR SIIAAEGSER VVRHVGISVW RSFFSRYGLV 60 KTEMNEWSHY YGLVETEMNE WSHYQASLLG KQFANGHFCT LDKNGKALTL GWKGTPLLFL 120 SAWKFQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008808707.2 | 6e-73 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2H3Z635 | 1e-71 | A0A2H3Z635_PHODC; DELLA protein RGL1-like | ||||
STRING | XP_008808707.1 | 2e-72 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1722 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 2e-10 | GRAS family protein |