PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1091791g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 268aa MW: 29290.5 Da PI: 9.0904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.1e-20 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+f+t+eeAa+a+++a+++l+ge PDK_30s1091791g002 23 RFVGVRQRP-SGRWVAEIKDSS---QRLRLWLGTFDTPEEAARAYDEAARALRGE 73 589******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.18E-30 | 23 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-28 | 23 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 23 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 24 | 35 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-20 | 24 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-7 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MAGTESPKAT TPKQPPKSSN GRRFVGVRQR PSGRWVAEIK DSSQRLRLWL GTFDTPEEAA 60 RAYDEAARAL RGENARTNFV TNPNSPPRDF SSANGPFFLD SDVRRGGGGG GFSSLRARLS 120 KNFQNIMART ADNNRSSKTR VSDQFTFASI FHCRGNSFQQ CLMDTVSIEK SVQPSFIVPR 180 PAEEQSEWGS SECVGLGPHA TNSWDEPMNA CDVGIPQRGF SDQMMWGIDG GEVGGRGEKE 240 LTCSRRFKVS SSIIVPPTFS ASPSLGEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 23 | 84 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934547.1 | 1e-165 | dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A426ZA35 | 2e-83 | A0A426ZA35_ENSVE; Uncharacterized protein | ||||
STRING | XP_008809070.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-18 | related to AP2 11 |