PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1090391g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 345aa MW: 37719.5 Da PI: 6.2396

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1090391g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l + ++++G g+W++ ++ g++R++k+c++rw +yl PDK_30s1090391g001 14 KGPWTPEEDKKLTEFIQKHGHGSWRLLPKNAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	58.3	1.8e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l+vd++ lG++ W++Ia++++ gRt++++k++w+++l PDK_30s1090391g001 67 RGKFSEEEEKLIVDLHSALGNK-WSLIAARIP-GRTDNEVKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.655	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.00E-12	16	61	No hit	No description
PROSITE profile	PS51294	27.137	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-17	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	6.60E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGRSPCCEEV SLKKGPWTPE EDKKLTEFIQ KHGHGSWRLL PKNAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEKLIVD LHSALGNKWS LIAARIPGRT DNEVKNYWNT HLRKKLLRMG 120 IDPVTHMPRT DLNLPGSLST VLADANFGNW SSLASVLKLQ ADAALAARMQ VVQTLLKVLT 180 NSPTSNLDLM GLLGSASLGN HQLSGLLQLS RQYEGLIDSS LSLHGSIQMP SSLPNLSFQN 240 LLSNVQACTK SSLSLDGEVA AQLDGSGLSE HGTESNGFSA NFYDFPTSNS TASLLPASSE 300 DTHIDQTQGP VTSSNVSSIS APFEAWEDLN LDDLSSDFGW KDILE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGRSPCCEEV SLKKGPWTPE EDKKLTEFIQ KHGHGSWRLL PKNAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEKLIVD LHSALGNKWS LIAARIPGRT DNEVKNYWNT HLRKKLLRMG  120
IDPVTHMPRT DLNLPGSLST VLADANFGNW SSLASVLKLQ ADAALAARMQ VVQTLLKVLT  180
NSPTSNLDLM GLLGSASLGN HQLSGLLQLS RQYEGLIDSS LSLHGSIQMP SSLPNLSFQN  240
LLSNVQACTK SSLSLDGEVA AQLDGSGLSE HGTESNGFSA NFYDFPTSNS TASLLPASSE  300
DTHIDQTQGP VTSSNVSSIS APFEAWEDLN LDDLSSDFGW KDILE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-32	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029117651.1	0.0	transcription factor MYB53-like
Swissprot	Q9S9Z2	2e-79	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2H3ZI96	0.0	A0A2H3ZI96_PHODC; transcription factor MYB41-like
STRING	XP_008778716.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5529	31	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-88	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]