PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1089941g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 179aa MW: 19920.9 Da PI: 9.21 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.2e-09 | 59 | 106 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq PDK_30s1089941g001 59 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 106 8*************************9....788889999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-15 | 53 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.65E-9 | 53 | 110 | No hit | No description |
PROSITE profile | PS50888 | 14.526 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-15 | 55 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 59 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-8 | 61 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGHVPVFCNG IGFWKKVKGA AKKTKSAEEG SAKGAEENTA GEKLPYVHVR ARRGQATDSH 60 SLAERARREK INARMKLLQE LVPGCSKISG TALVLDEIIN HVQSLQRQVE LLSMRLAAVH 120 PRIDFRGLDS FLSAEGQFFG PFTAPVAFIR HIMKDEFEFY LEFEEFTSVF SILGPVLST |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787270.1 | 1e-78 | transcription factor bHLH48-like isoform X4 | ||||
Refseq | XP_008787271.1 | 1e-78 | transcription factor bHLH48-like isoform X5 | ||||
Swissprot | Q8VZ02 | 2e-51 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A2H3XQH1 | 3e-77 | A0A2H3XQH1_PHODC; transcription factor bHLH48-like isoform X5 | ||||
TrEMBL | A0A2H3XQM3 | 3e-77 | A0A2H3XQM3_PHODC; transcription factor bHLH48-like isoform X4 | ||||
STRING | XP_008787267.1 | 2e-76 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6932 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 3e-53 | bHLH family protein |
Publications ? help Back to Top | |||
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