PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1084501g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26682.8 Da PI: 5.6823 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l++ v+q+G g+W+ +++ g++R +k+c++rw +yl PDK_30s1084501g005 17 KGPWTAQEDEILIEHVNQHGEGRWNCVSKLTGLRRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.3e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ PDK_30s1084501g005 70 RGKITPHEENIILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.771 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-14 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-9 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.979 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.96E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEGQLMSWGT LENGWRKGPW TAQEDEILIE HVNQHGEGRW NCVSKLTGLR RNGKSCRLRW 60 VNYLRPDLKR GKITPHEENI ILELHALWGN RWSTIARSLP GRTDNEIKNY WRTHFKKSKP 120 SKNIEKARAR FLRQQQEQQE REEEQQQADM RGIMTQVEEA ALAQDMQEMA YMYPLNYMLQ 180 GGEGGGGGSI SDGSSEEEAW GSLWNLDDVH DDGEGVCRGG LTMQDQVLTF Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 17 | 117 | 7 | 106 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783782.1 | 1e-172 | myb-related protein 340-like | ||||
TrEMBL | A0A2H3XHF5 | 1e-170 | A0A2H3XHF5_PHODC; myb-related protein 340-like | ||||
STRING | XP_008783782.1 | 1e-171 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 4e-67 | myb domain protein 79 |