PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1082721g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 298aa    MW: 32611.2 Da    PI: 6.4189
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1082721g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-1559104148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PDK_30s1082721g001  59 RGPIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 104
                         566679****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-42042IPR009057Homeodomain-like
PROSITE profilePS500905.2042449IPR017877Myb-like domain
SuperFamilySSF466899.18E-1926100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-74465IPR009057Homeodomain-like
PROSITE profilePS5129425.16454108IPR017930Myb domain
SMARTSM007172.7E-1458106IPR001005SANT/Myb domain
PfamPF002496.0E-1460104IPR001005SANT/Myb domain
CDDcd001677.98E-1264104No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2066104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRNPSSRSVM KQRQKGAPTP CCSKVGVKRG PWTPEEDEVL AKFSCRLRWM NYLRPSIKRG  60
PIAPDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP  120
LISFSTNPDA LLPEGPKIQP PARIPCRNPN PNPNANPAGS PIPSVHQQIS GGHGGVGPHD  180
DRDGFFGSVS LEQDDGWQNT EASASMDLQG SQGGGDTGED DVLSSFLDSL INDDIFLQNQ  240
HQNVNCNDNN NNGQIQSNDP SISLGPGFGL GTLWESTFAS PARLDEEIHG QVVDHAGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17291087108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794112.10.0transcription repressor MYB5-like
SwissprotQ388503e-57MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2H3Y6F30.0A0A2H3Y6F3_PHODC; transcription repressor MYB5-like
STRINGXP_008794112.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-57myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]