PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1080961g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29756.9 Da PI: 8.6 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.6 | 1.1e-48 | 11 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+++yL++ v+gkkl++ ++i ++++y+++Pw+Lp +k +e+ewyfF++rd+++++g r+nr+t++g+Wkatg+d+++ PDK_30s1080961g001 11 PGFRFHPTEEELLDFYLRRAVRGKKLQI-DIIGTLNLYRHDPWELPGLAKIGEREWYFFVPRDRRQSNGGRPNRTTEHGFWKATGSDRPIR 100 9***************************.99***************8888899************************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ ++l+glkktLv+y+grap+g+ktdWvm+eyr+ PDK_30s1080961g001 101 SAadPKRLIGLKKTLVYYQGRAPRGSKTDWVMNEYRF 137 98777788***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.993 | 9 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-56 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-25 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEQSGAGLGL PGFRFHPTEE ELLDFYLRRA VRGKKLQIDI IGTLNLYRHD PWELPGLAKI 60 GEREWYFFVP RDRRQSNGGR PNRTTEHGFW KATGSDRPIR SAADPKRLIG LKKTLVYYQG 120 RAPRGSKTDW VMNEYRFPDA TTPPTEDIVL CKIYRKATSL KELEQRAAMA SPNSRSMVDL 180 VLQKCMAVDD DGVKEPEEEV EKEAKVEVLA ESTRSTSLPR LDIPKYNGLE WMQDPFLTQL 240 RSPWMDLWSP YYASVLNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-49 | 11 | 156 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008781351.1 | 0.0 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 1e-103 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A2H3XBR7 | 0.0 | A0A2H3XBR7_PHODC; NAC domain-containing protein 22-like | ||||
STRING | XP_008781351.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 6e-88 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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