PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1080591g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 335aa    MW: 37229.8 Da    PI: 8.0678
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1080591g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.62.4e-14259284126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ + ++G+C+yG++C+FaHg
  PDK_30s1080591g005 259 FKTELCNKWEESGECPYGENCQFAHG 284
                         79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-18253291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-10255290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901258286IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8258285IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11259284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-11292322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8293322IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737296324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQQELVTPTN GERLRSAIGS APFLSPDQRL SSPPYFANGG DFFWPYTSVI SISPTEGTPT  60
RVTPLSGSAS VSLTPSSVSF DEEDPAATEN RLLYLARLTL QYQEIAERYE LCLSHLQDAA  120
QEAEALRQEN AKLRISNGEL AKRLSLLSDK QSHRIASIAA GGHPALDRGR ENRFARRTAE  180
KRVLMPKSIS VRSSGYLKLN QAGSAANRNG RLRVSSPVML GSQRVYVGGG SKKKGERGGE  240
EDEEGWEALE LEVYNQGMFK TELCNKWEES GECPYGENCQ FAHGIAELRP VIRHPRYKTE  300
VCRMILAGDT CPYGHRCHFR HALSPSDRFF LHPSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-22259321466Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985712e-69AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAC0988322e-69AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence.
GenBankAK1063542e-69AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
GenBankAP0149612e-69AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-69CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924174.10.0zinc finger CCCH domain-containing protein 9
SwissprotQ6L5G11e-100C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3Q0I9M71e-141A0A3Q0I9M7_PHODC; zinc finger CCCH domain-containing protein 9-like isoform X2
STRINGXP_008800937.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-65C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]