PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1080341g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | FAR1 | ||||||||
Protein Properties | Length: 675aa MW: 77651.9 Da PI: 7.6677 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.7 | 1.6e-22 | 86 | 176 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA ++GF +r+++s+++kr+g ++++fvC keg+++++ ++ ++k++r+r + r gC a+++v ++ +kw+vtkl+leH+H + PDK_30s1080341g002 86 FYNAYALRIGFGIRVARSRSEKRKGveVLVMKRFVCLKEGHHKKKVTEyASKKKRKRLSIRDGCPAMMEVVRRGPDKWVVTKLVLEHTHVV 176 9*************99999886665226789***********9998887889999**********************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-20 | 86 | 177 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-30 | 264 | 355 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.559 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.1E-9 | 545 | 577 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.6E-6 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MEYSSSEDDE LVEDCMDLEE DIGASDVDQR TGEVTDSLHF GDQLCNSVVT VEHSVGNVLL 60 TTDGEVKNEE PYMGMVFDSD LSARAFYNAY ALRIGFGIRV ARSRSEKRKG VEVLVMKRFV 120 CLKEGHHKKK VTEYASKKKR KRLSIRDGCP AMMEVVRRGP DKWVVTKLVL EHTHVVVSPD 180 KVREIQLNHL SGKDREHENY LREVRQKIFG EGDAQGLLEY FKRMQAENSG FFYAVQVDYR 240 NCMTNVFWAD AKARMAYTYF GDAITFDTTY KKNENMMPFA AFMGVNHHGQ PVVFGCALVV 300 DKTESSFAWL FETWLTAMFG RRPLSFTTDQ GKAMEVAVAK VFPNTRHRLC RWHILSRCKK 360 KLSDVCTSYP SFYVELKKCV NESDTVDVFE VYWRSILDKY GLRENVWLQL LYNVRHKWVP 420 AYLKGSFYAE LSTTQKLESL NRFYRNNFDK KLSLHAFIAK FDQAMDCRFE KEAQEDLAVL 480 HDQRILKTDA PLEKQAANIY TRAVFEKFQV ELIEALDHYS VKIQDGAISK FSVERDGDAR 540 NRHIVFLNAS EKKACCSCSK FEFAGILCRH VLAVFLVTGV ILLPEHYILK RWTRKAKSGL 600 ILEDDRGVEF QNYCQSSPIL RYNDLVHDAM KCAEKGATSA ENYKIVKDIL QKAFAEIVAL 660 EENVAKAGPH HAENM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 141 | KKKVTEYASKKKRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914954.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_010914955.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A3Q0I2L4 | 0.0 | A0A3Q0I2L4_PHODC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_008792125.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-166 | FAR1-related sequence 5 |