PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1079431g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 329aa    MW: 36915.5 Da    PI: 6.972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1079431g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
  PDK_30s1079431g004 13 RGLWSPEEDEKLSKYITTHGHGCWSSVPKQAGLQRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding49.31.2e-1566109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  PDK_30s1079431g004  66 RGSFSAQEERVIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-27463IPR009057Homeodomain-like
PROSITE profilePS5129417.968860IPR017930Myb domain
SuperFamilySSF466892.02E-2810107IPR009057Homeodomain-like
SMARTSM007171.0E-121262IPR001005SANT/Myb domain
PfamPF002492.4E-151360IPR001005SANT/Myb domain
CDDcd001674.35E-111660No hitNo description
PROSITE profilePS5129425.36261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-2564116IPR009057Homeodomain-like
SMARTSM007176.6E-1565113IPR001005SANT/Myb domain
PfamPF002495.5E-1466109IPR001005SANT/Myb domain
CDDcd001675.47E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLSKYITT HGHGCWSSVP KQAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS AQEERVIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLIPA ARPNNSINSA NISQFHHPQS STTPFTISSP IKSFETTQST PMDMNTSLVT  180
LPPPPTLPLH ETIPISTFQY QDANVLMSYK DQNSHTSIDF THGSSSLDQP NMSSSSFHQP  240
GFMDDCMWAS TVEPLEAPRQ NEVEFQQGQG QAQALACKMG FDGPNEEKRL EMESSYNSST  300
FDIELMESAL MPSGVFCGGS SIEQLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5785019e-59AJ578501.1 Elaeis guineensis microsatellite DNA, clone mEgCIR0146.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798713.10.0transcription factor MYB26-like
TrEMBLA0A2H3YH420.0A0A2H3YH42_PHODC; transcription factor MYB26-like
STRINGXP_008798713.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-83myb domain protein 67