PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1078361g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 388aa    MW: 43769.8 Da    PI: 7.7365
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1078361g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.5e-13319343226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ktelC+ + + G+C+yG+rC+FaHg
  PDK_30s1078361g006 319 KTELCNKWVEKGWCPYGERCQFAHG 343
                         8***********************8 PP
2zf-CCCH21.44.3e-07356380125
                         --S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                         ykt lCr  a +G C+yG rC+F H
  PDK_30s1078361g006 356 YKTQLCRMLASGGDCPYGHRCHFRH 380
                         9**********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530985.22E-1573200IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.101.1E-994180IPR012337Ribonuclease H-like domain
Gene3DG3DSA:4.10.1000.109.7E-17315350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10316349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.032317345IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6317344IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10319343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-8351383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-12351380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901355383IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042355382IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4356380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVKQGGDYKK HHQTARLSKL SPERTSRYPH QIHCHERGVP VVAGWKTKTQ GGVIREKGLP  60
YFPHSTPLSG LPPVWPEKNR FPLPLLVLPF LGFDVHGISN YMVNRPDVPR FKELVPSLIQ  120
YVRNRQMAGK PVLCVSHNGR RFDVPFVIEE FQHCSEEVPA DWLFVDTFPL ARQLAKPDSR  180
ESIKPKDQGL PPPHGMHNAS TMTSDAGARA QIMINELHRL EVFFLFRGIS GSNERSEGFV  240
AVEMEGDITL PASQNSVAAT NTSCCSFEDC DESTAESAGW ISGDQFEIQK NQILRELQQM  300
GKEGDGEVEV EAYSQGMAKT ELCNKWVEKG WCPYGERCQF AHGIQELRPV IRHPRYKTQL  360
CRMLASGGDC PYGHRCHFRH ALPSPRDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-21319380566Butyrate response factor 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-38C3H family protein