PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1078331g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 413aa    MW: 45396.1 Da    PI: 7.1384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1078331g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-16131176147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  PDK_30s1078331g001 131 RGHWRPAEDSKLRELVALHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 176
                         899*****************************.***********996 PP
2Myb_DNA-binding56.18.6e-18183226146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PDK_30s1078331g001 183 RSAFTEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 226
                         789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.42126177IPR017930Myb domain
SMARTSM007174.1E-14130179IPR001005SANT/Myb domain
PfamPF002494.5E-16131176IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-28131224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-26132184IPR009057Homeodomain-like
CDDcd001674.82E-13134175No hitNo description
PROSITE profilePS5129426.953178232IPR017930Myb domain
SMARTSM007179.7E-15182230IPR001005SANT/Myb domain
PfamPF002491.9E-14183225IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-21185231IPR009057Homeodomain-like
CDDcd001675.59E-12185225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MALNQCNGSQ GLRSFPPSSS SSSSSSKGLF AEMGSLSIKP ASSVESYCST KGSEKTSRTS  60
SSMRNYIGLE DHPPRNNEDG GVKWCDASDG FGENHVKSTG EESPEGENTN EGPLGGRETA  120
ADCGQSKLCA RGHWRPAEDS KLRELVALHG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR  180
INRSAFTEEE EEKLMAAHRL YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KYREQSNAYS  240
RRKLSQAVPR RLEETTATSV AFGFNTNLHL PFAHPSPAMC GSNGLYHITT GESGEDSVSC  300
YCGFSSDQAP YDFLSGVKAQ DKTRSFHSTN SWCWQRPRDE PFMGSYPQHP FMVAMQQSRY  360
PSYLSDYSTA SAASGVSAAE ISPSSSFKEN GENGHFEATT SPPFIDFLGV GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-331312317107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781016.10.0transcription factor CSA-like
TrEMBLA0A2H3XAP10.0A0A2H3XAP1_PHODC; transcription factor CSA-like
STRINGXP_008781016.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-72myb domain protein 105