PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1076221g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 34729.9 Da PI: 7.047 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.1 | 1.1e-50 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+v+yL++kv+ + l++ +i+evd+yk++PwdLp+k+ +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+ PDK_30s1076221g001 13 LPPGFRFHPTDEELIVHYLRRKVACQCLPV-PIIAEVDLYKYDPWDLPEKALFGQREWYFFTSRDRKYPNGSRPNRAAGRGYWKATGADKP 102 79****************************.88***************8878899************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v +++ g+kk+Lvfy+g+ kg+ktdW+mheyrl PDK_30s1076221g001 103 VSPPgSSRPLGIKKSLVFYHGKGLKGVKTDWIMHEYRL 140 *99867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.02E-61 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.675 | 13 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-27 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGRRRDAETE LNLPPGFRFH PTDEELIVHY LRRKVACQCL PVPIIAEVDL YKYDPWDLPE 60 KALFGQREWY FFTSRDRKYP NGSRPNRAAG RGYWKATGAD KPVSPPGSSR PLGIKKSLVF 120 YHGKGLKGVK TDWIMHEYRL ADTNRAASKK NSLRLDDWVL CRLYNKKNSW EKTQRQKEKG 180 TPEEMTDSME ASESFRTTPE SDIETELFPD FDSLDWAGGQ LRQAFDNGVD AMRTSNTGSF 240 QMIERQKEDS DWFSGLYLDD LQSSSAAFGA TPAIDMWNQE YYFPTISSPY LKPSQTSMPH 300 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-91 | 1 | 172 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN003551 | 1e-167 | JN003551.1 Elaeis guineensis clone Eg-C4-352 NAC protein 1 (NAC) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008793369.1 | 0.0 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-106 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A2H3Y4X1 | 0.0 | A0A2H3Y4X1_PHODC; NAC domain-containing protein 68-like | ||||
STRING | XP_008793369.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 4e-88 | NAC domain containing protein 32 |