PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1074861g022
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 520aa    MW: 57458.3 Da    PI: 8.8446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1074861g022genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-1759105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT++Ede l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  PDK_30s1074861g022  59 KGGWTPQEDETLRKAVEAYKGRCWKKIAEFFP-DRTEVQCLHRWQKVL 105
                         688*****************************.************986 PP
2Myb_DNA-binding61.41.8e-19111157148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT eEde+++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  PDK_30s1074861g022 111 KGPWTLEEDEKIINLVQKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                         79******************************.*************97 PP
3Myb_DNA-binding54.33e-17163206146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT eE++ l +a++ +G++ W+ Ia+ +  gRt++++k++w++
  PDK_30s1074861g022 163 KDAWTVEEELTLMNAHRIHGNK-WAEIAKLLS-GRTDNSIKNHWNS 206
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.77254105IPR017930Myb domain
SuperFamilySSF466892.8E-1555112IPR009057Homeodomain-like
SMARTSM007171.5E-1558107IPR001005SANT/Myb domain
PfamPF002499.1E-1659105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2261113IPR009057Homeodomain-like
CDDcd001671.34E-1362105No hitNo description
PROSITE profilePS5129430.901106161IPR017930Myb domain
SuperFamilySSF466898.44E-32108204IPR009057Homeodomain-like
SMARTSM007173.0E-18110159IPR001005SANT/Myb domain
PfamPF002491.7E-18111157IPR001005SANT/Myb domain
CDDcd001673.62E-16113157No hitNo description
Gene3DG3DSA:1.10.10.607.7E-27114160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-22161212IPR009057Homeodomain-like
PROSITE profilePS5129422.194162212IPR017930Myb domain
SMARTSM007172.1E-15162210IPR001005SANT/Myb domain
PfamPF002492.3E-15163206IPR001005SANT/Myb domain
CDDcd001671.57E-11165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAAVKIEQSC VENKQSAAAS SSSISEGSYG FSRMSPAGSS PATSSPSHRR TSGPIRRAKG  60
GWTPQEDETL RKAVEAYKGR CWKKIAEFFP DRTEVQCLHR WQKVLNPELI KGPWTLEEDE  120
KIINLVQKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPL IKKDAWTVEE ELTLMNAHRI  180
HGNKWAEIAK LLSGRTDNSI KNHWNSSLKK KLDFYLATGK LPPVPKPGEH SGSKDIGNPT  240
SGHLNKGSDT STKALSEIAG STHSLLPSES CKLEEHGEWL GPSTIQISSS ETFTGVPIRE  300
LNSSAVACQA QAMQVDNISN GSDPGERFWN DSNTGESDKD NKIPGITLPS ELSSTFGSLC  360
YEPPQLEDLD VSVDSTLLNT HDVNQQSYSL GMVTSPPDYF TPPFVSGKSS SQHSAESILK  420
NAARSFPNTP SILRRRKREA NTHLPPDRTV QTDQIRIQDS SCTPIEGKSG IDQQPSKIVP  480
YNGKTFNVSP PYRLRSKRTS IIKSVEKKLD FTSREDNIDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-70582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-70582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776835.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_026657014.10.0transcription factor MYB3R-3-like isoform X1
SwissprotQ0JHU71e-139MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A2H3X1D00.0A0A2H3X1D0_PHODC; transcription factor MYB3R-3-like isoform X1
STRINGXP_008776835.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-127myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]