PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1072871g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 262aa    MW: 28851.6 Da    PI: 6.2575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1072871g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-143075146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g+W +eEde+l+++v+++G+++W++I ++  + R++k+c++rw +
  PDK_30s1072871g001 30 KGPWMAEEDEILIEYVRKHGPRDWSSIRSKGLLPRSGKSCRLRWVN 75
                        79*************************8876677**********87 PP
2Myb_DNA-binding45.61.6e-1486126345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++++eE+ + +d+ +++G++ W++Ia +++ gRt++++k++w 
  PDK_30s1072871g001  86 KFSPEEERIVIDLQARFGNK-WARIATYLP-GRTDNDVKNFWS 126
                         79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.6482581IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-202778IPR009057Homeodomain-like
SuperFamilySSF466893.19E-2828125IPR009057Homeodomain-like
SMARTSM007171.2E-122979IPR001005SANT/Myb domain
PfamPF002491.1E-123075IPR001005SANT/Myb domain
CDDcd001672.97E-133277No hitNo description
Gene3DG3DSA:1.10.10.606.2E-1979131IPR009057Homeodomain-like
PROSITE profilePS5129418.33282133IPR017930Myb domain
SMARTSM007171.3E-1283131IPR001005SANT/Myb domain
PfamPF002494.9E-1386126IPR001005SANT/Myb domain
CDDcd001671.50E-1186125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQEAGGGITS SSKTPSNNGK EEGGGMALKK GPWMAEEDEI LIEYVRKHGP RDWSSIRSKG  60
LLPRSGKSCR LRWVNKLKPD LKTGCKFSPE EERIVIDLQA RFGNKWARIA TYLPGRTDND  120
VKNFWSTRQK RLARILRTPL PSRSNKNHGK MPKEPCLSDT APPSQPPFDH LPHPLVGLPV  180
LPEDAPGLSP GFGDASFPEE LACPEPPPEG LPFLGLDAGH DGIERVDEHP GDFFDDLPAD  240
MFDYLEPPTP PPPPPPASST SW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-282813125126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778249.11e-158probable transcription factor MYB58
SwissprotQ0JB897e-69MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A2H3X4N41e-157A0A2H3X4N4_PHODC; probable transcription factor MYB58
STRINGXP_008778249.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.13e-63MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]