PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1071631g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YB
Protein Properties Length: 181aa    MW: 19749.7 Da    PI: 5.7643
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1071631g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.42.8e-5536131297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal+tlGf+dy+ep++ yl+kyre
  PDK_30s1071631g002  36 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSTLGFDDYAEPMRRYLQKYRE 126
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +eg++
  PDK_30s1071631g002 127 MEGDR 131
                         ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5433158IPR009072Histone-fold
SuperFamilySSF471133.47E-4138160IPR009072Histone-fold
PfamPF008087.9E-2841105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.8E-206987No hitNo description
PROSITE patternPS0068507288IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.8E-2088106No hitNo description
PRINTSPR006152.8E-20107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MADGVGNSPE SEGHPNNFHT AQGTSGGAAS GDGGIKEQDR LLPIANVGRI MKQILPPNAK  60
ISKEAKETMQ ECVSEFISFV TGEASDKCHK EKRKTVNGDD ICWALSTLGF DDYAEPMRRY  120
LQKYREMEGD RAASGSQNSR ANSMDARDEV RGEQQKYQSS GAGQSMFNAM EGNNASTSRR  180
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4535126192Transcription factor HapC (Eurofung)
4g92_B3e-4535126192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779404.11e-134nuclear transcription factor Y subunit B-1-like
SwissprotO822481e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2H3X7671e-133A0A2H3X767_PHODC; nuclear transcription factor Y subunit B-1-like
STRINGXP_008779404.11e-134(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-59nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]