PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1070441g010

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 760aa MW: 84865.5 Da PI: 5.1162

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1070441g010	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.6e-06	119	139	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C +f++ G+C G++C+F+Hgp PDK_30s1070441g010 119 CYYFQK-GHCLKGEKCPFMHGP 139 999999.*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.002	21	48	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.606	21	49	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	7.3E-12	21	75	No hit	No description
PROSITE profile	PS50103	10.962	51	77	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.14	53	76	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.709	113	140	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-6	113	138	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-4	114	139	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	1.1	120	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MESGGGREGI HPLTAEEEAV KRNTDCVYFL ASPLTCKKGN ECEYRHSEGA RINPRDCWYW 60 LNGNCLNPKC LFRHPPLDGL FGTPGPSAGP AQPPSQTVAA AQSPKWHAPY AMNKQNVSCY 120 YFQKGHCLKG EKCPFMHGPQ TSGNPVSQQV SKVSTTPTEP PEDSWVIKDC TTQQNIPSQL 180 NVPSQPYVPK VSVDKPKVSV NKPVQVPPAS VKPVTKAESG PSNVPTIKKS VPPHSTDDEL 240 YGMQQNQFPV SSAYAVSRPR DHQVQPSGDR PQNGRETDEF LVESSPGFDV LVDDEIEESD 300 YFHNEGNFGR ASVQGGRNQN PIDEYDYRHD DYESGNTFER DRYNGVSEYD RYGEVHDSYG 360 WEPCRASSER ILERSLFERS VSRRETDYDE RDGSDLRHRL LKQRRLNSSR SAVSPDGCSE 420 PYRSDDHYFE GRDRGHHSRR NQRRIPRESS ISTRLRGRIT LPGRSSPDIA TDLRSENDRH 480 RGRPHGRLSP PRPINYLGRR QERVRGRSYE EFAADSRSTG VKPTRRDDGN FLDFAGPKSL 540 AELKGAKVME NSQEPSTKST SATASPDLNK VKATKAARIR DSEDSLSFEG PKPLSIILKR 600 KRGAASGNGA ISSSGDENNR GDGEVAKDGS VSAASSDVQS IPPVEAKKDV SDTFTRLEHH 660 DGRAEEGEEE EGPSRGEEEG SILDGRSSAK KDMLEKDRME VDAMEDQELE NYDQRYGESD 720 YEADEGGNLK TDDDENVYQE DEDELDDEDD FAKKVGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MESGGGREGI HPLTAEEEAV KRNTDCVYFL ASPLTCKKGN ECEYRHSEGA RINPRDCWYW  60
LNGNCLNPKC LFRHPPLDGL FGTPGPSAGP AQPPSQTVAA AQSPKWHAPY AMNKQNVSCY  120
YFQKGHCLKG EKCPFMHGPQ TSGNPVSQQV SKVSTTPTEP PEDSWVIKDC TTQQNIPSQL  180
NVPSQPYVPK VSVDKPKVSV NKPVQVPPAS VKPVTKAESG PSNVPTIKKS VPPHSTDDEL  240
YGMQQNQFPV SSAYAVSRPR DHQVQPSGDR PQNGRETDEF LVESSPGFDV LVDDEIEESD  300
YFHNEGNFGR ASVQGGRNQN PIDEYDYRHD DYESGNTFER DRYNGVSEYD RYGEVHDSYG  360
WEPCRASSER ILERSLFERS VSRRETDYDE RDGSDLRHRL LKQRRLNSSR SAVSPDGCSE  420
PYRSDDHYFE GRDRGHHSRR NQRRIPRESS ISTRLRGRIT LPGRSSPDIA TDLRSENDRH  480
RGRPHGRLSP PRPINYLGRR QERVRGRSYE EFAADSRSTG VKPTRRDDGN FLDFAGPKSL  540
AELKGAKVME NSQEPSTKST SATASPDLNK VKATKAARIR DSEDSLSFEG PKPLSIILKR  600
KRGAASGNGA ISSSGDENNR GDGEVAKDGS VSAASSDVQS IPPVEAKKDV SDTFTRLEHH  660
DGRAEEGEEE EGPSRGEEEG SILDGRSSAK KDMLEKDRME VDAMEDQELE NYDQRYGESD  720
YEADEGGNLK TDDDENVYQE DEDELDDEDD FAKKVGVMFS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008804174.1	0.0	zinc finger CCCH domain-containing protein 32-like
TrEMBL	A0A2H3YUW0	0.0	A0A2H3YUW0_PHODC; zinc finger CCCH domain-containing protein 32-like
STRING	XP_008804174.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6604	32	41