PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1070441g009
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 976aa    MW: 108927 Da    PI: 6.6549
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1070441g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.9e-23300401199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  PDK_30s1070441g009 300 FCKILTASDTSTHGGFSVPRRSAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 387
                         99*****************************8544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  PDK_30s1070441g009 388 -WNEKNQLLLGIRRA 401
                         .8899999****997 PP
2Auxin_resp114.78.2e-38426509183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka+  +++svGmRf+m fete+ss rr +Gt++ +sdldpvrWpnS+Wrs+k
  PDK_30s1070441g009 426 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRISVGMRFRMLFETEESSVRRNMGTITEISDLDPVRWPNSHWRSVK 509
                         79********************************87599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530989.36E-1051175IPR012337Ribonuclease H-like domain
CDDcd062221.48E-1555174No hitNo description
PfamPF134567.6E-1556176No hitNo description
SuperFamilySSF1019361.83E-48285429IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-41293415IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-21299400No hitNo description
PfamPF023623.2E-21300401IPR003340B3 DNA binding domain
SMARTSM010198.6E-24300402IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478300402IPR003340B3 DNA binding domain
PfamPF065071.7E-32426509IPR010525Auxin response factor
PfamPF023092.3E-6872968IPR033389AUX/IAA domain
SuperFamilySSF542777.26E-6874954No hitNo description
PROSITE profilePS5174522.654880964IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MVVDRAVPLA RKVISCAAMF SPGMVRDIWG ALSTATAPRF ALVSWVPPPL GHLKINFDGS  60
MLMDGVSRGV GFVIRDHFGR LVAAGRHRTT GLTAVGAELR AAWEGISYVR RALHAEWVYL  120
EGDLSVVIDW ILGADRYGDG HPLIRETHRL AMELDEFQTT HVFREANRAA DWVASFVARY  180
SEKILWTSTK RCLNSELWHA CAGPLVCLPT VGTRVVYFPQ GHSEQVAAST NKEVEGQIPN  240
YPNLPPQLIC QLHDVTMHAD VETDEVYAQM TLQPLNPQEL NDAYLPAEMG IISKQPTNYF  300
CKILTASDTS THGGFSVPRR SAEKVFPPLD FSQQPPAQEL IARDLHDVEW KFRHIFRGQP  360
KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ASRPQTVMPS SVLSSDSMHI  420
GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLSKYVKAV FHTRISVGMR FRMLFETEES  480
SVRRNMGTIT EISDLDPVRW PNSHWRSVKV GWDESTAGER SPRVSLWEIE PLTTFPMYPS  540
LFPLRLKRPW YPGVPSFHDE GNALMWLRGG ASDRGLPSLN FQSPGVGPWV QQRMESTLLG  600
HDHDRYPAMA APALPDTRGS DYLKQQFLHL QQPYQLPQQF CSTSPLLQQQ IIQQACEQQI  660
ISPQSQNISG NLTHNVLHQQ LQQSINNQKQ VQHAQTYPES YQIPGTHVQQ QQAPLPSQLC  720
EKLEFSDSSV NFSTVMTSSS VQGMLGTAYP EGSSNVLDFA RLGQSMMSEQ NQQTWEPKFT  780
MSQSTTFGNA VLLPSFPGKD GSVGTENGST DMQNHTLFGV NIDSSSLLSH AVPSIRANSI  840
DDSISTMPYA SSSLQNSIYG SLEESPGVLQ NAGESDPTTK TFVKVYKSGS VGRSLDITRF  900
NNYGELREEL GLMFGIKGQL EDPLRSGWQL VFVDRENDVL LLGDDPWESF VNNVWYIKIL  960
SPEDVQKMGK RAIEPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-15719053048388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804149.10.0auxin response factor 12-like
RefseqXP_008804156.10.0auxin response factor 12-like
RefseqXP_008804164.10.0auxin response factor 12-like
RefseqXP_017700749.10.0auxin response factor 12-like
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2H3YVJ60.0A0A2H3YVJ6_PHODC; Auxin response factor
STRINGXP_008804149.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8