PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1070141g018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 144aa MW: 16089.5 Da PI: 10.2266 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 33 | 53 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C+++F++ L H PDK_30s1070141g018 33 FECKTCSRRFPTYQALGGHRT 53 89**********998877765 PP | |||||||
2 | zf-C2H2 | 17.6 | 1.1e-05 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+sFs L H+r+H PDK_30s1070141g018 78 HECSICGQSFSMGQALGGHMRRH 100 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.87 | 33 | 55 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.556 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.16E-7 | 33 | 100 | No hit | No description |
Pfam | PF13912 | 4.2E-11 | 33 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.033 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 78 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.5E-11 | 78 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.699 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
METMKTANLL LSLSRGGTPE KIYRRTKTED GMFECKTCSR RFPTYQALGG HRTGHKRPRL 60 QGLGLDLMQG SRLKPTSHEC SICGQSFSMG QALGGHMRRH KPSSESFPET KAGLEKSMLE 120 FNAIPLENGC SRERSRGVLL ELFV |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008788150.1 | 3e-71 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2H3XSQ1 | 8e-70 | A0A2H3XSQ1_PHODC; zinc finger protein ZAT11-like | ||||
STRING | XP_008776407.1 | 1e-101 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-25 | C2H2 family protein |