PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1070141g016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 29242 Da PI: 5.4792 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw +yl PDK_30s1070141g016 10 KGPWTEQEDQQLVCFVGLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T +E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++ PDK_30s1070141g016 63 RGRMTLQEQRLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.529 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-29 | 9 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-20 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.91E-11 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 21.117 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.77E-10 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MVTVKEETRK GPWTEQEDQQ LVCFVGLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGRMTLQE QRLILELHSR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKRDAI 120 SPSWSSSSLA YHSPSPSEPP PEVGLEQREL NEVGVCCCMT AGFDEEEEDV KGYSMDQIWN 180 EIATPEAVSG LSFEECKNEV CDTSWPPMPS PMWEYSSEPL WKMDDEEFKM FPPVDDLLVS 240 NYQHGREFCT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-29 | 10 | 112 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-28 | 10 | 112 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-28 | 10 | 112 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-29 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 8e-29 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008776389.1 | 0.0 | myb-related protein MYBAS2-like | ||||
Swissprot | Q4JL76 | 1e-89 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A2H3X099 | 0.0 | A0A2H3X099_PHODC; myb-related protein MYBAS2-like | ||||
STRING | XP_008776389.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 6e-80 | myb domain protein 59 |
Publications ? help Back to Top | |||
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