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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PDK_30s1066741g001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 184aa MW: 20973.4 Da PI: 5.3454 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
W++Ia +++ gRt++++k++w+++l
PDK_30s1066741g001 1 WSLIAGRLP-GRTANDVKNYWNSHL 24
*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00167 | 1.17E-5 | 1 | 24 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 3.5E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 15.395 | 1 | 28 | IPR017930 | Myb domain |
| Pfam | PF00249 | 3.9E-6 | 1 | 24 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 3.83E-6 | 1 | 28 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 184 aa Download sequence Send to blast |
WSLIAGRLPG RTANDVKNYW NSHLSKKPDV RDHGERSKRG NIVFKPRPQT IPTTWIWSRD 60 QLSSASEIRQ EKTQVPEIPS SENHKTRVDT QIIGVPNVEN VITEEMQTDN RVIQDLEDNK 120 DDESLAGVGE NVLSISAPGD KVMLTNNSES LENNMRGHHS LIFEIYDKKL SRDFVEFSLP 180 LLLE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_026657506.1 | 2e-86 | transcription factor MYB114-like | ||||
| TrEMBL | A0A3Q0HSF8 | 5e-85 | A0A3Q0HSF8_PHODC; transcription factor MYB114-like | ||||
| STRING | XP_008779039.1 | 9e-86 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP25500 | 2 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G66370.1 | 8e-15 | myb domain protein 113 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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