PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1066041g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 472aa MW: 52875.2 Da PI: 7.1415

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1066041g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.8	1.2e-28	117	168	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ + PDK_30s1066041g001 117 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQIF 168 8*************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-26	113	168	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-13	115	173	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.2E-20	117	168	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-7	118	166	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MGVEKEKEVV EICEDEEKSE KSERSVGSSR SPSRRRPAPA LDLNEVVAAE GSEEGEAERG 60 EDEDDGESTT EVAGGGSSSN NSSTNNCSNK DNNNSGVAEG NGEQVPRVRQ YIRSKMPRLR 120 WTPDLHLSFV HAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQIFVF FLSTMIKQKF 180 YNDVMSPMDM HMRRGDRLHE MFYQRPGAHQ SFRMESGSFF PSRGTPDHAR LYSLLHRLQL 240 QHPVDLRSCN FGRHQEWAFN QQAAARAGTT KDPGSAKCLI HDAIFRKDEK PSTSHTFDVG 300 KTTTGNGNMR PSHQFLEERR WLPGEMVGDQ RPEGNRLGSF DLMGGSSSPL ATALQNHPMS 360 KPMTRSQENL AKKENRIAEV KRMRMTMQRD WIPNLQLSLS PNLEHDESNS NKGVEAEEEV 420 DSVLSLSLST PISMRQKETG KPEIQFLQKG SSHKVAMGLS TSDLTMSIKA LE

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MGVEKEKEVV EICEDEEKSE KSERSVGSSR SPSRRRPAPA LDLNEVVAAE GSEEGEAERG  60
EDEDDGESTT EVAGGGSSSN NSSTNNCSNK DNNNSGVAEG NGEQVPRVRQ YIRSKMPRLR  120
WTPDLHLSFV HAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQIFVF FLSTMIKQKF  180
YNDVMSPMDM HMRRGDRLHE MFYQRPGAHQ SFRMESGSFF PSRGTPDHAR LYSLLHRLQL  240
QHPVDLRSCN FGRHQEWAFN QQAAARAGTT KDPGSAKCLI HDAIFRKDEK PSTSHTFDVG  300
KTTTGNGNMR PSHQFLEERR WLPGEMVGDQ RPEGNRLGSF DLMGGSSSPL ATALQNHPMS  360
KPMTRSQENL AKKENRIAEV KRMRMTMQRD WIPNLQLSLS PNLEHDESNS NKGVEAEEEV  420
DSVLSLSLST PISMRQKETG KPEIQFLQKG SSHKVAMGLS TSDLTMSIKA LE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-15	118	168	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-15	118	168	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-15	118	168	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-15	118	168	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017698352.1	0.0	uncharacterized protein LOC103707382
TrEMBL	A0A2H3ZPJ1	0.0	A0A2H3ZPJ1_PHODC; uncharacterized protein LOC103707382
STRING	XP_008790063.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2754	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	6e-30	G2-like family protein