PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1065261g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 378aa    MW: 41947.5 Da    PI: 9.1484
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1065261g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30161217259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vk+se++rsYY+Ct ++C +k+kver+  d+++vei+Y+geHnh+
  PDK_30s1065261g003 161 SDGYNWRKYGQKQVKSSENSRSYYKCTNTNCFAKRKVERCP-DGRIVEIIYRGEHNHD 217
                         7****************************************.***************7 PP
2WRKY34.83.3e-11332352222
                         --SS-EEEEEEE--TT-SS-E CS
                WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                         +Dgy+WrKYGqK vkg+++pr
  PDK_30s1065261g003 332 SDGYRWRKYGQKIVKGNPNPR 352
                         8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-27149219IPR003657WRKY domain
PROSITE profilePS5081122.905155219IPR003657WRKY domain
SuperFamilySSF1182902.48E-24156219IPR003657WRKY domain
SMARTSM007747.5E-33160218IPR003657WRKY domain
PfamPF031061.0E-22162217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-11316352IPR003657WRKY domain
SuperFamilySSF1182901.27E-8325353IPR003657WRKY domain
PROSITE profilePS5081113.54326352IPR003657WRKY domain
SMARTSM007746.5E-5331370IPR003657WRKY domain
PfamPF031065.1E-7333352IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MASPEGSPRA RQIVSVPVDS VRLPGGRRAL LPGSRCAAGV ARILVFNQEK HKVVLRLSIP  60
CQGWGKQFEF LGQFAMTHQA VLATVTAQAQ MQLQASYPSS STELVSTSVP QPMLSNFGPV  120
SFQQRPLAVC QDSVCTPKTE QLPSSDRKLQ SAHIVAKTAI SDGYNWRKYG QKQVKSSENS  180
RSYYKCTNTN CFAKRKVERC PDGRIVEIIY RGEHNHDPPQ KTKCSQERGA QSGGPNGDNE  240
NLELPSREIN ESDPSACKSE QISGNDTPER QLYCSSDCEG DAGIKPAEDI GEEPDRKRRL  300
IESIMNISTP VLRTVREPKI VVQRACDVGH VSDGYRWRKY GQKIVKGNPN PRLAIGWYDL  360
VFYGKHCRIS TLDKVVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-131602191777Probable WRKY transcription factor 4
2lex_A3e-131602191777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299DRKRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017695965.10.0probable WRKY transcription factor 4
TrEMBLA0A2H3X0H10.0A0A2H3X0H1_PHODC; probable WRKY transcription factor 4
STRINGXP_008776488.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-46WRKY DNA-binding protein 3