PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1064101g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Nin-like

Protein Properties

Length: 912aa MW: 101195 Da PI: 6.4148

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1064101g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.5e-29	599	649	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l+kyF++++kdAAk+Lgvc+T+LKriCR++GI+RWP+Rkik++ PDK_30s1064101g001 599 EKTISLQELRKYFAGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKIKKV 649 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.018	588	669	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.06E-23	814	903	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.4E-24	816	899	No hit	No description
PROSITE profile	PS51745	25.829	818	901	IPR000270	PB1 domain
SMART	SM00666	1.5E-26	818	901	IPR000270	PB1 domain
CDD	cd06407	3.46E-40	819	900	No hit	No description
Pfam	PF00564	1.3E-17	819	900	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MDLMDEFLSV AGLDCSDLLQ PGTSTSTSPF NSSGFSPLFE VGNGGGSNPV LPENDNQDDA 60 EWSVFSVDLP SDEIPIELLN ELRAKNPSSE LGSSWWIRPS TRMGTMEERL IRAINYVKDS 120 RRDGDVLVQI WVPTRMGERH VLTTCGQPFT LDSSCQRLVN YRTVSTRYQF SAEENSNVAQ 180 GLPGRVFLGR VPEWTPDVRY FSSYEYPRVN DAQRYDVRGS LALPVFERNS RSCVGVLEVV 240 MTTQKINYSS DLEGVCNALQ AVDLRSSEVS GVPRVMVFNE SYRVVLPEIQ RVLRAVCKTH 300 SLPLAQTWIS CIQQGKSGSR HSDENYKDCV STVDVACYVQ DPTMLGFHQA CSEHHLLKGQ 360 GVAGKAFTTN QPCFSSDITS FSKTEYPLSH HAKLFHLRAA VAIRLRSNHT GTADFVLEFF 420 LPFKCIESEE QKLMLNSLSI TIQQVCQSLR VVTSKELEHE AVLPVSELNS SNALLDKFVS 480 ETSQRLDDDD DNLLTESPTI GISGEVSSWI ASIRETQEKR GKSVLPASVP LDFYKQEIEG 540 LSVWDRSEVV LPAGKIFSEF KPHEEEFLRD SFDPKNSFAG EPGFSNTGKA MEKRRTKTEK 600 TISLQELRKY FAGSLKDAAK SLGVCPTTLK RICRHHGISR WPSRKIKKVG HSLRKLQVVI 660 DSVHGPDGAF QFSSLYENFT KATWSNESLL GSTTFSTLKQ KDNPESSNTN QQQEAKLSSH 720 TSGSNSPSSS SSSHSSGSSL GCSSGTKQCS NAQLAIQQEI SVEENQSGML NKIQIPIELQ 780 LSTEDAPISL GRSQNHKLLS EHPFSGTHAA LHKSRHDSLK VKAIYGEDKV ILGLQPTWGF 840 QDLKQEIGKR FNIGNINLVA LKYLDDDSEW VLLTCDADLQ ECIDVYKSSS ARTIKISVHH 900 VPQKITSSSG IA

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MDLMDEFLSV AGLDCSDLLQ PGTSTSTSPF NSSGFSPLFE VGNGGGSNPV LPENDNQDDA  60
EWSVFSVDLP SDEIPIELLN ELRAKNPSSE LGSSWWIRPS TRMGTMEERL IRAINYVKDS  120
RRDGDVLVQI WVPTRMGERH VLTTCGQPFT LDSSCQRLVN YRTVSTRYQF SAEENSNVAQ  180
GLPGRVFLGR VPEWTPDVRY FSSYEYPRVN DAQRYDVRGS LALPVFERNS RSCVGVLEVV  240
MTTQKINYSS DLEGVCNALQ AVDLRSSEVS GVPRVMVFNE SYRVVLPEIQ RVLRAVCKTH  300
SLPLAQTWIS CIQQGKSGSR HSDENYKDCV STVDVACYVQ DPTMLGFHQA CSEHHLLKGQ  360
GVAGKAFTTN QPCFSSDITS FSKTEYPLSH HAKLFHLRAA VAIRLRSNHT GTADFVLEFF  420
LPFKCIESEE QKLMLNSLSI TIQQVCQSLR VVTSKELEHE AVLPVSELNS SNALLDKFVS  480
ETSQRLDDDD DNLLTESPTI GISGEVSSWI ASIRETQEKR GKSVLPASVP LDFYKQEIEG  540
LSVWDRSEVV LPAGKIFSEF KPHEEEFLRD SFDPKNSFAG EPGFSNTGKA MEKRRTKTEK  600
TISLQELRKY FAGSLKDAAK SLGVCPTTLK RICRHHGISR WPSRKIKKVG HSLRKLQVVI  660
DSVHGPDGAF QFSSLYENFT KATWSNESLL GSTTFSTLKQ KDNPESSNTN QQQEAKLSSH  720
TSGSNSPSSS SSSHSSGSSL GCSSGTKQCS NAQLAIQQEI SVEENQSGML NKIQIPIELQ  780
LSTEDAPISL GRSQNHKLLS EHPFSGTHAA LHKSRHDSLK VKAIYGEDKV ILGLQPTWGF  840
QDLKQEIGKR FNIGNINLVA LKYLDDDSEW VLLTCDADLQ ECIDVYKSSS ARTIKISVHH  900
VPQKITSSSG IA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017702242.1	0.0	protein NLP1-like
Refseq	XP_026655950.1	0.0	protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A2H4A0L6	0.0	A0A2H4A0L6_PHODC; protein NLP1-like
STRING	XP_008812750.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]