PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1061801g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 832aa MW: 88057.6 Da PI: 6.2193

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1061801g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.9e-08	333	361	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r+ WT+eEd l+ av++ G g+W+ I + PDK_30s1061801g001 333 RKLWTKEEDMELIAAVQKCGEGNWANILK 361 567***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.99	328	396	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-11	329	375	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-9	331	375	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-4	332	384	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-6	333	361	IPR001005	SANT/Myb domain
CDD	cd11660	4.69E-12	336	393	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MGSKKKGSIT EDDVSILVQS INAITLLSLF EFPNKHLETF NELIGLLSSC NQGVILKDCV 60 GLWKDIDEMK KRHDLIWGIT FTFRRQIFDT FVPRAELRAA WTGLRYSATS ILALLQEISQ 120 FAGPKIDWSA LVKKTSTGIT NPREYQMLWR HLAYRDKLLD KVEDKSEPLS CIYQILPLYL 180 EHLQLLLGFY HRFVQFQPFT SSSDSHLTCG SGISDKMDDD SDLEFELEAF PAPSAEALSD 240 ATACAKILIV SGSSRESGPT NRTNLEAPLT RNLPDGQTPH DPSDKQQLAH ATSGTNAGVS 300 HSVQKQQLAT KRPAEVSDGN GSAGSGLPAK KKRKLWTKEE DMELIAAVQK CGEGNWANIL 360 KGDFKHNRTA SQLSQERVIG VANVGKRWAT IRRRQANLFA GSGNKTVNST RSEERLAAQK 420 AFSLALDMPM TGSLSAILSG STQSNTPASS ATLSASASEA LPASAPLQAS TQTASQKVAS 480 NTSNKPRTIP KKPVAPGKPS VGPNPLIQAA AFAAGGRIAT PSTAASLFKA AQSKSAVHIR 540 HGGGANPKSP IMAAKSSPAT NMVGSQPPSV RHAQLAVTMP TPAVASSVLS PTLPRHGMQQ 600 LQGSSQRPTS NPPTGCAAVP NSSAPPTLSE SKPSADSQEN ADSNSDIAFP VIATIDVDEL 660 LAEEVRGADE LELDGAAAQN HQTELLSLDV GENDNNIVNN AACGMQKAVA GGMDISKSQI 720 DENQTVDNKA VSPDTGTAES KAMEIDVGGS QIPVEEGTKS ASGVSGKSQS VNAVSSQNPI 780 VAQEQSAGTE AGVDEVKQSC IQVEQHAALE DIASSNKSSG DDEAGSICAK QD

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MGSKKKGSIT EDDVSILVQS INAITLLSLF EFPNKHLETF NELIGLLSSC NQGVILKDCV  60
GLWKDIDEMK KRHDLIWGIT FTFRRQIFDT FVPRAELRAA WTGLRYSATS ILALLQEISQ  120
FAGPKIDWSA LVKKTSTGIT NPREYQMLWR HLAYRDKLLD KVEDKSEPLS CIYQILPLYL  180
EHLQLLLGFY HRFVQFQPFT SSSDSHLTCG SGISDKMDDD SDLEFELEAF PAPSAEALSD  240
ATACAKILIV SGSSRESGPT NRTNLEAPLT RNLPDGQTPH DPSDKQQLAH ATSGTNAGVS  300
HSVQKQQLAT KRPAEVSDGN GSAGSGLPAK KKRKLWTKEE DMELIAAVQK CGEGNWANIL  360
KGDFKHNRTA SQLSQERVIG VANVGKRWAT IRRRQANLFA GSGNKTVNST RSEERLAAQK  420
AFSLALDMPM TGSLSAILSG STQSNTPASS ATLSASASEA LPASAPLQAS TQTASQKVAS  480
NTSNKPRTIP KKPVAPGKPS VGPNPLIQAA AFAAGGRIAT PSTAASLFKA AQSKSAVHIR  540
HGGGANPKSP IMAAKSSPAT NMVGSQPPSV RHAQLAVTMP TPAVASSVLS PTLPRHGMQQ  600
LQGSSQRPTS NPPTGCAAVP NSSAPPTLSE SKPSADSQEN ADSNSDIAFP VIATIDVDEL  660
LAEEVRGADE LELDGAAAQN HQTELLSLDV GENDNNIVNN AACGMQKAVA GGMDISKSQI  720
DENQTVDNKA VSPDTGTAES KAMEIDVGGS QIPVEEGTKS ASGVSGKSQS VNAVSSQNPI  780
VAQEQSAGTE AGVDEVKQSC IQVEQHAALE DIASSNKSSG DDEAGSICAK QD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	334	KKKRKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ830520	7e-31	KJ830520.1 Elaeis guineensis clone EGEMS0294 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781504.1	0.0	uncharacterized protein LOC103701275
TrEMBL	A0A2H3XBV2	0.0	A0A2H3XBV2_PHODC; uncharacterized protein LOC103701275
STRING	XP_008781504.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-55	MYB_related family protein