PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1060231g010
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 291aa    MW: 32643.9 Da    PI: 5.6645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1060231g010genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.67e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l++ +      +W+++++  g+ R++k+c++rw +yl
  PDK_30s1060231g010 14 KGAWTAEEDKKLINFILSNRQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding53.94.1e-1770111447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++ E++l ++++ qlG++ W++Ia++++ gRt++++k++w+++
  PDK_30s1060231g010  70 LSESEEKLVIELHSQLGNR-WSKIAAHLP-GRTDNEIKNHWNTH 111
                         5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-19563IPR009057Homeodomain-like
PROSITE profilePS5129412.538961IPR017930Myb domain
SuperFamilySSF466892.32E-2511108IPR009057Homeodomain-like
SMARTSM007173.4E-101363IPR001005SANT/Myb domain
PfamPF002496.8E-131461IPR001005SANT/Myb domain
CDDcd001673.86E-71661No hitNo description
PROSITE profilePS5129427.28762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2564116IPR009057Homeodomain-like
SMARTSM007176.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.1E-1570111IPR001005SANT/Myb domain
CDDcd001673.98E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGAWTAE EDKKLINFIL SNRQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEKLVIE LHSQLGNRWS KIAAHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPLTHKPIA STVDQQQQQG DASVHGNDKN EQLCVQCPSK MTQEEAEERS ITSSSDPVET  180
DAFLSKSPGF CTDEVPMIEP HEIIVPCASS TPSISSVSIS SSCSSSSSDA KADEIQLPCM  240
DWPESLFLWG LDDFMGLDFL NDDGDGKLGL DPPSQYQRTA FDQESWKFEL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803910.10.0transcription factor MYB20-like
SwissprotQ9C7U74e-91MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2H3YUZ60.0A0A2H3YUZ6_PHODC; transcription factor MYB20-like
STRINGXP_008803910.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.12e-94myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]